Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1072 ATGGGAGTAAGAGAATTAGAAAACCGTTTCGTCACAACCCTGAGAACCTGCTCGAAAATCTCGGAACTGAAGAAGCTTCACGCTCACATCGTGAAGTTGTCACTTTCACAGAGCAACTTTCTGGCCACCAAAATGTTGGATCTGTGCGACAACTTGGGTCACGTGGATTACGCGACCTTGATATTCCAAAATCTAGAGGACCCAAACGTGTTCTCTTACAACGCAATAATCAGAACCTGCACTCATAATCACAAACATTCTCTAGCAATTACTGTATTCAACGAAATGCTGAGACATGCAATGAAATCAGCACTGCCAGACAAATTCACGTTCCCTTCGGTGATAAAGTCGTGTGCCGGCATTCTGTGTCATCGTCTCGGGCAGCAAGTTCACGCGCAAGTGTGCAAGTTTGGACCCAAGTCGCACGCAATAACGGATAACGCACTGATTGACATGTACACGAAGTGTGGCGATTTGAGTGGTGCATACCAAGTGTTTGAGGAAATGGCTGATCGAGACTCGGTTTCGTGGAATAGTTTAATCTCGGGGCATGCGAGGTTGGGGCAGATGAAGAGTGCGAGGGAAGCGTTTGATGAAATGCCTTGTAGGACAATCGTGTCTTGGACGACTATGATTAATGGGTATGCTAGAGCAGGGTGTTCCGTCGAAGCGTTAGAGATTTTTCGCGAGATGCAAGTTGTGGGTATTGAACCTGATGAGATAAGTGTTATATCTGTTCTGCCGGCGTGTGCACAGCTTGGCGCTCTTGAAGTTGGAAAGTGGATTCACAAGTACTCGGAGAAAAGTGGGTTTTTGAAGAAGACTGCTGTGTGTAATGCACTGATTGAAATGTATTCTAAGTGTGGCTGCATTGATGAATCTTTGGGGTTGTTTGATCAGATGGTTGAGAAGGATGTGATTTGTTGGAGTACCATGATTGGGGGACTGGCTAATCATGGAAAAGGGTATGCTGCAATACGAGTTTTTGAAGATATGCAGAATGCAGGAGTGGCGCCTAATGGGGTAACATTTGTTGGTGTTTTGTCAGCTTGTGTTCATGCAGGGTTGTGGAAAGAGGGGTTGAGATATTTTGATGTTATGAGGGTGGATCATCATTTAGAGCCAGAGATTGAGCACTATGGTTGCCTAGTTGATCTTCTAGGACGCTGCGGACGGCTTCATCAGGCACTTGACACAATAATGACTATGCCAATGCAACCAGATTCCAGGATATGGAACACTTTGTTGAGCTCTTGCAGGATTCATCGTAATCTTGAGATTGCTGCTGTTGCCATGGAACAACTTTTGGAGCTTGAGCCTGAAGAGTCTGGAAACTATGTGTTGCTTGCTAACATATATGCAGAACTTGGGAAGTGGGAAGGTGTTTCAAATGTTAGGAAACTCATTAGAAGCAATAGGATAAAGAAAACACCCGGGAGTAGTTTGATTGAAGTGAACAATATGGTTCAGGAATTTGTATCAGGTGACCATTCAAAGCCCTTTTCACAAGATGTTTTCTTGATCCTAGAAGGGCTGACTTTACACCAAACTACAACCAGTGACTTCATGGAGTTTGGGGAATAA 1584 0.4451 MGVRELENRFVTTLRTCSKISELKKLHAHIVKLSLSQSNFLATKMLDLCDNLGHVDYATLIFQNLEDPNVFSYNAIIRTCTHNHKHSLAITVFNEMLRHAMKSALPDKFTFPSVIKSCAGILCHRLGQQVHAQVCKFGPKSHAITDNALIDMYTKCGDLSGAYQVFEEMADRDSVSWNSLISGHARLGQMKSAREAFDEMPCRTIVSWTTMINGYARAGCSVEALEIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKKTAVCNALIEMYSKCGCIDESLGLFDQMVEKDVICWSTMIGGLANHGKGYAAIRVFEDMQNAGVAPNGVTFVGVLSACVHAGLWKEGLRYFDVMRVDHHLEPEIEHYGCLVDLLGRCGRLHQALDTIMTMPMQPDSRIWNTLLSSCRIHRNLEIAAVAMEQLLELEPEESGNYVLLANIYAELGKWEGVSNVRKLIRSNRIKKTPGSSLIEVNNMVQEFVSGDHSKPFSQDVFLILEGLTLHQTTTSDFMEFGE* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1072 527 Pfam PPR repeat family 204 251 IPR002885 -
Pvu9g1072 527 Pfam PPR repeat family 68 119 IPR002885 -
Pvu9g1072 527 Pfam PPR repeat family 304 352 IPR002885 -
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 172 IPR002885 -
Pvu9g1072 527 Pfam E motif 422 484 IPR046848 -
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Pvu9g1072 527 Pfam PPR repeat 147 172 IPR002885 -
Pvu9g1072 527 Pfam PPR repeat 175 202 IPR002885 -
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Pvu9g1072 527 SUPERFAMILY TPR-like 153 460 IPR011990 GO:0005515
Pvu9g1072 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Pvu9g1072 527 PANTHER OS05G0439300 PROTEIN 3 523 - -
Pvu9g1072 527 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 523 - -
Pvu9g1072 527 Gene3D Tetratricopeptide repeat domain 257 370 IPR011990 GO:0005515
Pvu9g1072 527 Gene3D Tetratricopeptide repeat domain 371 505 IPR011990 GO:0005515
Pvu9g1072 527 Gene3D Tetratricopeptide repeat domain 6 121 IPR011990 GO:0005515
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 71 98 IPR002885 -
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 277 306 IPR002885 -
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 175 201 IPR002885 -
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 145 173 IPR002885 -
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Pvu9g1072 527 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Pvu9g1072 527 Gene3D Tetratricopeptide repeat domain 128 256 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1072 Pvu-Chr9 15759369 15760952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1072 12 512 Glycoside Hydrolase AT3G49170 33.268 3.67e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1072 - - gmx:100806006 920.228