Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1027 ATGGCCATTCTCCACTGCACCCCACTTCCATTTCTTTCCCTCAGAACCACCCTCTATTCCTCCAAGTCCTCATTAACCTCAACATTCACAAACTCAACAACAAGAACAAGAAATCTGTTGTTTGTGGCGATGAACACGTTTTCGAAATCCGAACCCGTGTCGTCTTCGGCCTCTTCTTCATCAACGTACGAGGTGCCGGAGTTAGCTGCTAACGACATGGACCGCATATCAGACAACACGTTTGGAAGGTACACGGGGAGCACCAAAAGGAGTGGCAAAGGAACGGCCATTGTGTGGTTCAGGAATGATCTCAGAGTATTGGATAATGAGGCTCTCTACAAAGCATGGCTTTCCTCTGAAACCGTGTTACCTGTCTACTGCGTTGACCCGAGACTCTTTGCCACTACTTATCATTTCGGCTTTCCCAAAACCGGCGCATTGAGAGCGCAATTTCTCCTTGAATGCTTGGTTGACTTGAGGAAGAATTTGATGAAAAAGGGACTTAATTTGCTTGTACAACATGGGAAGCCTGAGGAGATTCTTCCTTCTCTTGCCAAAGCATTTCAAGCTCATACAGTGTATGCGCAGAAAGAAACGTGCAGTGAGGAGCTGAATGTTGAAAGGTTAGTCATGGGAGGTCTTAAGCAAGCTGTGACATCACCAGAAGAATCCAGTGGTGTCACAGTTTCAAACAAGATCACTAAATTGCAATTAGTTTGGGGTACCACCATGTACCATCTTGATGACCTCCCTTTTGATGCCTCTTCTTTGCCAGATATGTATACTCAATTTCGCAAGATTATTGAAGCCAAATGTACCATACGCCCATGCATCAAACTACCACCATCTCTTGGACCACCTCCCTTAATTGAGGATTGGGGGTGCCTTCCTTCATTAGAGCAGCTTGGACTTTGCTCACAGAATGTTATCAAGGGAATGAAGTTTGTGGGGGGTGAAACTGCGGGATTGAGCAGAGTATATGAATACTTCTGGAAGAAGGATTTGCTGAAGGTATATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCCTATATGAAGAGGTGAAGAGATATGAGAACGAAAGACTAGCAAATAGTTCCACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATCTAGGTGGCCCTAGGAAAGTTCAACGCAACTGGAGCCAAGACAAGAGTTTGTTTGAATCCTGGAGAGATGGTTGTACGGGGTATCCTCTCATAGATGCCAACATGAAAGAACTATCGACTACAGGGTTTATGTCTAATCGAGGACGGCAGATAGTGTGTTCCTTTCTTGTTCGTGATATGGGCATAGACTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTACGGATCAGGAGTTGGGAATGATCCGAGAGAAGATCGGTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAGTATGTTGCTTACTGGTTGCCACAGTTGCGAAAAATCCAAAAGGAGAAAAGGAACTTCCCTGGAAATATGTACATTCCTCAAGTTGTGCCTCTCAAGTTTGGAACAGCTAGTGGAAGCAACAAGGACAGTTCCCCTGGTGCAAGAAGAAGCAATCACAGAGGAAATGAAAGAAAATGGAACAGAAGATAA 1776 0.4437 MAILHCTPLPFLSLRTTLYSSKSSLTSTFTNSTTRTRNLLFVAMNTFSKSEPVSSSASSSSTYEVPELAANDMDRISDNTFGRYTGSTKRSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLVDLRKNLMKKGLNLLVQHGKPEEILPSLAKAFQAHTVYAQKETCSEELNVERLVMGGLKQAVTSPEESSGVTVSNKITKLQLVWGTTMYHLDDLPFDASSLPDMYTQFRKIIEAKCTIRPCIKLPPSLGPPPLIEDWGCLPSLEQLGLCSQNVIKGMKFVGGETAGLSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFLYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVQRNWSQDKSLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIQKEKRNFPGNMYIPQVVPLKFGTASGSNKDSSPGARRSNHRGNERKWNRR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1027 591 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 412 566 - -
Pvu9g1027 591 Gene3D HUPs 60 241 IPR014729 -
Pvu9g1027 591 PANTHER CRYPTOCHROME DASH 86 569 - -
Pvu9g1027 591 PRINTS DNA photolyase signature 438 454 IPR002081 -
Pvu9g1027 591 PRINTS DNA photolyase signature 458 476 IPR002081 -
Pvu9g1027 591 PRINTS DNA photolyase signature 497 511 IPR002081 -
Pvu9g1027 591 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 94 229 IPR006050 -
Pvu9g1027 591 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 311 547 IPR036134 -
Pvu9g1027 591 TIGRFAM crypto_DASH: cryptochrome, DASH family 95 537 IPR014133 GO:0003913|GO:0006281
Pvu9g1027 591 Pfam DNA photolyase 96 276 IPR006050 -
Pvu9g1027 591 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 93 292 IPR036155 -
Pvu9g1027 591 Gene3D - 242 411 - -
Pvu9g1027 591 MobiDBLite consensus disorder prediction 564 591 - -
Pvu9g1027 591 Pfam FAD binding domain of DNA photolyase 391 547 IPR005101 -
Pvu9g1027 591 PANTHER CRYPTOCHROME 86 569 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1027 Pvu-Chr9 15293010 15297054 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1027 K25656 - gmx:100783312 1023.08