Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1002 ATGTCCAACAATCTGGTTTCAGAGCCCATACCCAGTATGCAAATGGCTCGGTTGGAGCCGATTATGAACAAGGTTGATTCGTCAGGGAGACAGATGGAAATGGGGATTTTGGGTCCCGTGTCCAGTGATATTGTGTCACAGCCTATGGGAATCTCAAATGAACATGTTGGGTTATTGAGAGCTGTGCCTGGTGAATCTAGGTCTCAGGGCATGCCCCTTTCGAGCATGCAGAGTGGGCTAGTAGAAGAACTAGCGAGTAATCCAGAAAGGCATCAAATTCTTTCCTCTAACAGACAGTCCATGCAAATGGGGAGGCTTCCAAATAGCGCAGGGCCTCAGCAGCAGATAACAACTCCCAAGCGCAAGGCACCACCGGAACTATCATCCAGTAGTTCCTTTAACAAGCGGCTTGCACAAATGGGAAACAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAGAGGTTCTCCGCAGATGCAATCCCTGTCAAATGCCTCCAGAACACAGCATTCGGCACCTTCTAGTAAGAGAAAAACACAGTTGGATACCACTGCCAGTAAAGCTGGGACACCTCGGTCTGTGAATTCTAAAATTCAGAATACCCAGATCAAGCAGTCCTCCAAGGCTCAAACCGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAGCAAGGTAAACCTCAGATCCCTAACAATAATACAGCAATTGATGACGCTACTAATACTCAAGGTAAAATAGAGAACAACTCTCAATGTTCTGGATCAACACCTACATCCATCAATGCTCCACTGGAGCAAAGTATTTCTCAACCAGTTAATTCCTCTTTTGCTGAGGCTGATTCAGTTGGCCGGGTGGAGAGAGAGCACATGCAGAGTACATCATTCAAAGAAGATTTTCCAGAAAAGTACAAGGACTATGAAGCAGGATCCACAAATGCATCTAACAATGAAAGCATACTGACTTCCATGCAAGTCTTGAACTGTGATAAGCAAGATTTCCAATCATGTTACACTTTGACCACTGATGATGTTCCTTTTAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTGGACGTGGGAAATCAAAGGGAAAGTCAAACTAATATAACGCAGAGATCAGAACCTGAGGAAACTGGTGGAGGTTGTAGGGAGGAGGTCCCTTTACCTGAACTTTTGGCATCAAAAATAGAATCTGAACTATTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCCCTTTTATTTAATTTAAAAGATCGCAATAACCCTGAGCTTAGAGAAAGGGTTATGTTTGGTCAAATTCCTCCTGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAAGAGCTCTCTCAGTGGCGTATAGCCAAAGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTAATTCAGATGTTGATTTTAGACGTTTGGTCAAGAAGACTCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTATCCGTGGAGGAGGTTTCTGGTGGCACAACTTCAGTGGCTAGAAGCCAAACAGCAATAAAGGATGTGGAAGGCACTTCTTCAAAACCTGACGTGAACATTGATGCCGAGAAGCACAGTTTACAGAAGGATGATACATTTTCCATTACCATTTCGTCCAACGACGGGACTGATCCCATGCAGGGGCTTATGACTGATGATGCATTGAAGGACCCTGATTTTCTTCCACCAATTGTCTCCCTCGATGAATTCATGGAATCTCTCCATTCTGAGCCACCGTTTGAAAATTTACGGCTAGAATCTGGGAAAGTGACACCTCCTTTAGACAAGGATGATTCTGGGGTTAGATCTAGATCAAAATCTTCTGATTTAACTCCAAATGAGCAAGCTGTTGTCACTCCTGACAAGTTTCAAAGCACATGTGTAAATTCAGATGCTGAAAAGGAGAAAAAGGCTGATGCTGAATCTGGGACCATTTCTTCTGATATGGGATACAGCGGGAGTCAAGCTTACATGAAGTCAACTGACAGTCGTACCAAGGAAAGGTCAATTGATGATGTGAAGCCTGCATCCAGCGATACCGAGTTCAAAGGCAATCAGGTTCATGCGGAAGGGAGATATGGTACTGATAATAGGTATTTGAAGGATGCCGTGCCCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATATCTACCACTCAGTCCGTCATAAGCTTCTATAAGAGTGGCGAGAAAACTGCAGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTAGATGCATTCGAGAAATTTCTTCAAGATCTTCGATTGTCTAGGAGTCGTGCAATCATGGTTTCACATTTCCTTTCCAAAGAGTTGGACGAGCAATCAACTCTCCGTGAGGTGGCTGACTCGTATATTTCGGACGAGAGAGTAGGATTTGCCGAGCCTGTGCATGGAGTAGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCTACCACTGCTACACACCACAAACATAGCTCTAAAAGACAACAATACTTTAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCATAAAGCAGTACCCCATACGGACTTTAAGACCATTGAGAATGAGAATGATGACGATGATGATGAAGTTCCTCCTGGATTTGGGCCACCAGCTGCCCGAGTTGAGGATGATCTGCCAGAGTTTAATTTCTCCAGCAGTTCGATTCCACCACACTTGGCCCAAAAGCCAAAGGAACTACCAAATATGGTTACATTACACTCAGTTAACCCAGCCCCACCACCAGCACGCCCTGTAGAACAAATGAGGGAACTCGTATACAAATATGGGCAAAACAAACCAAGTGCACCTTCAGTAAACTGGCAGGATAAATTTGGGGGGACAATTCAACCATGGAACGATGATGATGATGACATACCTGAATGGCAGCCCCAAACCTCCCAGCAGAATCAGTTTCTTCCGCAACAGACAATGCACAACTTTCATCTTCGACCGCACATTTTGAATCAATCATTTCCGGGTTCACAACAACAGCCTATTGTGACACCACAATACCTGCAACCCCCCATGAATGTGGCTCATAGCCAAAGAAATTTTGACCCTCAGTGGGTTCCTTCTCCTCAGGGTACCAACCTACAGCCAAGAGGTGCTCCGCCCTACGGAGCGCCTGCGCAAGGCACTACCTGGCCTCAAAATGTGTCTAGAAGTAGGGGATATTAG 3450 0.4412 MSNNLVSEPIPSMQMARLEPIMNKVDSSGRQMEMGILGPVSSDIVSQPMGISNEHVGLLRAVPGESRSQGMPLSSMQSGLVEELASNPERHQILSSNRQSMQMGRLPNSAGPQQQITTPKRKAPPELSSSSSFNKRLAQMGNRPWLQQVPNASNRGSPQMQSLSNASRTQHSAPSSKRKTQLDTTASKAGTPRSVNSKIQNTQIKQSSKAQTESSESVRSKMRESLAAALALVSQQGKPQIPNNNTAIDDATNTQGKIENNSQCSGSTPTSINAPLEQSISQPVNSSFAEADSVGRVEREHMQSTSFKEDFPEKYKDYEAGSTNASNNESILTSMQVLNCDKQDFQSCYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDVGNQRESQTNITQRSEPEETGGGCREEVPLPELLASKIESELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPNSDVDFRRLVKKTHKGEFQVEVEHEDNVSVEEVSGGTTSVARSQTAIKDVEGTSSKPDVNIDAEKHSLQKDDTFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLRLESGKVTPPLDKDDSGVRSRSKSSDLTPNEQAVVTPDKFQSTCVNSDAEKEKKADAESGTISSDMGYSGSQAYMKSTDSRTKERSIDDVKPASSDTEFKGNQVHAEGRYGTDNRYLKDAVPTKGECLWEGMLQPNISTTQSVISFYKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRLSRSRAIMVSHFLSKELDEQSTLREVADSYISDERVGFAEPVHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSSISPTTATHHKHSSKRQQYFSRRQQDINVNANSTHKAVPHTDFKTIENENDDDDDEVPPGFGPPAARVEDDLPEFNFSSSSIPPHLAQKPKELPNMVTLHSVNPAPPPARPVEQMRELVYKYGQNKPSAPSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQQNQFLPQQTMHNFHLRPHILNQSFPGSQQQPIVTPQYLQPPMNVAHSQRNFDPQWVPSPQGTNLQPRGAPPYGAPAQGTTWPQNVSRSRGY* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1002 1149 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 31 1130 - -
Pvu9g1002 1149 Gene3D - 389 480 IPR036575 GO:0006351
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 932 984 - -
Pvu9g1002 1149 Pfam Transcription factor S-II (TFIIS), central domain 410 493 IPR003618 GO:0006351
Pvu9g1002 1149 Pfam SPOC domain 748 890 IPR012921 -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 388 408 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 686 701 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 1101 1123 - -
Pvu9g1002 1149 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 31 1130 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 1135 1149 - -
Pvu9g1002 1149 SMART mid_6 380 488 IPR003618 GO:0006351
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 702 719 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 669 683 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 646 668 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 147 222 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 1101 1149 - -
Pvu9g1002 1149 ProSiteProfiles TFIIS central domain profile. 387 505 IPR003618 GO:0006351
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 147 215 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 293 310 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 622 722 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 236 289 - -
Pvu9g1002 1149 SUPERFAMILY Elongation factor TFIIS domain 2 413 481 IPR036575 GO:0006351
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 101 132 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 234 310 - -
Pvu9g1002 1149 MobiDBLite consensus disorder prediction 631 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1002 Pvu-Chr9 14985419 14991983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1002 - - gmx:100808809 1838.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1002 9 14985419 14991983 Pvu9g1002 9 14985419 14991983 ECH