Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0928 ATGCGAACAAGGTTTCTGAACATCATTTCCTCAGACCCTCCGAAGAACCTTAGCCCATTATCCCAGCTCTTCTTAATTTCCACGAACTCTGACCATTTTCCTGAGAAAATCGTTTCAACCTCCAATTTTCCCGAGAAAACCCCCCCGGAAGCCCAATCTCCTGAATCCCCTTTGATTCCGTCGCAAAATGAAGTCTTGGACACTCTCTTGCTCCGCAAAGCCGACCCCATATCGGCGTTGATGTTCTTCAAACAAGTAGAGAGAAAACGAGGGTTTGTAAAAACCGTTGATATTTTATGCTTATTGCTTCAGATTCTCGCTTCGAGCCCCGACACTCACGGAGATGCCAAGTATTTGCTCAATAACTATGTGTTTGGAGATTCAGCCCCTTGTGCGAAGGTGCTGGTGGAACTCTTGGTGGAGTGTGCGGAAAGGTACGGTTTTGAATTATCCGATTCAAGGGTTTTCAATTATCTGTTGAATAGTTATGTTAGAGCTAATAAGATCACGGACGCTGTTGAGTGCTTTAGAACCATGTTGGAGCACGGCGTGCTTCCTTGGGTTCCAATTGTGAACATACTTTTGACTGCAATGGTTAGGAGAAACATGGCTTACAATGTGTGCCAAGTGTATGATGAAATGGTTGAGAGAGAACTTTATGGCGATTGCTATACCTTGCATATTTTAATGCGTGCGTGTTTGAAGGGAGGGAGGTTTGCGGAGGCTTGGAACTACTTCGAAGAGGCGGTGGGTAGAGGGTTGAAGCTTGATGCGGCTGCCTATAGTATTGTTATTCAGGCTGTTTGTAGGGTGCCGGACTTGAATTTGGCGTGTAAGCTGTTGAAGGAGATGAAGGAGTTGGGATGGGTGCCATCTGAGGGTACTTATGTTGCTGTGATTGGTGCTTGTGTCAGGCAGGGGAATTTTGTAGAGGCGTTGAGGCTCAAGGATGAAATGGTGAGTAAGGGTGTGCCTATGAATGTAGTTGTTGCGACGAGCTTGATTAAAGGGCATTGTATGCGAAGGGATGTGAATAGTGCGTTGCGGATGTTTGATGAGGTTGTTGAGGCTGGTGTTACTCCCAATGTGGCTATGTTTTCGGTTTTGATAGATTGGTGTTCTAAGATTGGGAATGTGGAGAAGGCGAATGAACTTTACACCAGAATGAAACTCATGGGCCTCCAACCCACTGTCTTTATTGTAAATTTTCTGTTGAAAGGATTCCGGAAACAGAACTTGCTAGAAAATGCATATACATTGCTTGATGAGGCAGTTGAAAATGGAATTGCTAGTGTTGTTACATATAACATTGTTTTCTTGTGGCTCTGTGAATTGGGCAAGGTTAATGAGGCTTGCAATTTGTGGGACAAGATGATTGGTAAGGGTATTACGCCTTCGCTAGTTTCTTACAACCACTTGATCCTTGGTCACTGCAAAAAAGGCTGCATGGATGACGCATATAATGTGATGAATGGTATTATTAAAAGTGGCTTAAAACCAAATGTCATCACATACACAATTTTAATGGAAGGATCTTTTAAGAAGGGTGATTGTGATCGTGCTTTTGATGTGTTTGATCAAATGGTGGCTGCAGATATTGTGCCTACAGACTACACATTTAACACAATTATGAATGGCTTGTGTAAAGTTGGCCGAGTGTCTGAGGCAAAGGATAAGTTAAACACTTTTATCAAGCAGGGTTTTGTTCCCACATCTATGACTTATAATTGCATCATAGATGGATTTGTCAAGGAAGGTGCAATTGATTCTGCAGAGTCTACCTATAGGGAGATGTGTGACAGTGGAATTTCACCTAATGTCATCACTTGTACTACTTTGATTAATGGATTTTTCAAAACTAACAAGATTGATCTTGCTTTGAAAATGTATGATGATATGAAAAGCAAGGGTTTGGAATTGGATATTACTGCATATAGTGCTCTCATTGATGGTTTCTGCAAAATGCGAGACATGGAAAATGCAAGCAAAATCTTCTCTGAACTTTTGGAGGTTGGTTTGACTCCAAATACAATTGTTTATAACATCATGATTAGTGGTTTCAGAAATTTGAATAATATGGAAGCAGCACTTAACCTGCACAAGGAAATGATAAATAGTAAGATTCCATGTGATTTACAAGTATACACCTCACTGATTGGTGGACTTCTAAAAGAGGGGACAGCTAGAAAATGCAGGCAAGATTCTAAAGGAAATGGATGGGAATAG 2226 0.4155 MRTRFLNIISSDPPKNLSPLSQLFLISTNSDHFPEKIVSTSNFPEKTPPEAQSPESPLIPSQNEVLDTLLLRKADPISALMFFKQVERKRGFVKTVDILCLLLQILASSPDTHGDAKYLLNNYVFGDSAPCAKVLVELLVECAERYGFELSDSRVFNYLLNSYVRANKITDAVECFRTMLEHGVLPWVPIVNILLTAMVRRNMAYNVCQVYDEMVERELYGDCYTLHILMRACLKGGRFAEAWNYFEEAVGRGLKLDAAAYSIVIQAVCRVPDLNLACKLLKEMKELGWVPSEGTYVAVIGACVRQGNFVEALRLKDEMVSKGVPMNVVVATSLIKGHCMRRDVNSALRMFDEVVEAGVTPNVAMFSVLIDWCSKIGNVEKANELYTRMKLMGLQPTVFIVNFLLKGFRKQNLLENAYTLLDEAVENGIASVVTYNIVFLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHLILGHCKKGCMDDAYNVMNGIIKSGLKPNVITYTILMEGSFKKGDCDRAFDVFDQMVAADIVPTDYTFNTIMNGLCKVGRVSEAKDKLNTFIKQGFVPTSMTYNCIIDGFVKEGAIDSAESTYREMCDSGISPNVITCTTLINGFFKTNKIDLALKMYDDMKSKGLELDITAYSALIDGFCKMRDMENASKIFSELLEVGLTPNTIVYNIMISGFRNLNNMEAALNLHKEMINSKIPCDLQVYTSLIGGLLKEGTARKCRQDSKGNGWE* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0928 741 Gene3D Tetratricopeptide repeat domain 233 393 IPR011990 GO:0005515
Pvu9g0928 741 Gene3D Tetratricopeptide repeat domain 55 232 IPR011990 GO:0005515
Pvu9g0928 741 Gene3D Tetratricopeptide repeat domain 515 620 IPR011990 GO:0005515
Pvu9g0928 741 Gene3D Tetratricopeptide repeat domain 409 514 IPR011990 GO:0005515
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Pvu9g0928 741 Gene3D Tetratricopeptide repeat domain 621 740 IPR011990 GO:0005515
Pvu9g0928 741 Pfam Pentatricopeptide repeat domain 246 304 IPR002885 -
Pvu9g0928 741 Pfam Pentatricopeptide repeat domain 314 374 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat family 465 511 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat family 675 723 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat family 605 654 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 332 363 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 155 187 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 538 571 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 608 641 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 468 502 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 644 677 IPR002885 -
Pvu9g0928 741 TIGRFAM PPR: pentatricopeptide repeat domain 574 607 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Pvu9g0928 741 SUPERFAMILY HCP-like 232 471 - -
Pvu9g0928 741 SUPERFAMILY HCP-like 410 638 - -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Pvu9g0928 741 MobiDBLite consensus disorder prediction 38 58 - -
Pvu9g0928 741 Pfam PPR repeat 433 463 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat 155 184 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat 533 558 IPR002885 -
Pvu9g0928 741 Pfam PPR repeat 567 598 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Pvu9g0928 741 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 24 727 - -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Pvu9g0928 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Pvu9g0928 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 24 727 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0928 22 683 Glycosyltransferase AT1G05670 25.324 1.37e-78 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0928 - K15336 gmx:100777321 1180.62