Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0908 ATGGCTGCCAGACGAACTCCGACGCTAGCCAAATCGCTTTTCGCCGCCGTAACTGCTTCTAGAACCTCTCGTTCCCGGTCCGCGCGACGACTCTTCTCCGCCATAACTCGTGCTTCGGAGACTTCTCCGAATGTCCTTTCTCGGTCTCAGATTGTCGACGCACTTGCGGCCAACAATGTCGCCTCCGCCAAATTCCTCTCCCTCTCTTTCACCCGCAGCTTCCACGCCACTAATCCTTCCCTCCGCTCTGCTGCAAGCTCTCAGGTAGCCCAGACTGAATTCACAGAAATGGCATGGGAGGGGATTCTTGGGGCTGTTGATGCGGCTCGGGTTAGTAAACAGCAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTTTTGGAGCAAAAGGATGGCTTGGCACGAAGAGTGTTTACTAAGACAGGATTGGACAACACGTCTGTTCTACAGGCTACTGATGATTTTATAGCGAAGCAACCTAAGGTTACTGGCGACACTACTGGACCTGTTATAGGCTCACATCTTAGCTCCCTCTTGGATAATGCGCGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAGCACTTATTGCTTGCATTTCATTCAGATAAGAGGTTTGGGCAGCAGTTGTTCAAGAATCTTCAGCTTAGCGAGATAACTTTGAAGGATGCTGTACAAGCTGTTCGGGGAAGTCAAAGAGTCACTGATCAAAATCCGGAGGGGAAATATGAGGCATTGGATAAGTATGGAAACGATCTGACTGAACTTGCTAAGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCGGTTATTATTGGTGAACCCGGTGTTGGCAAAACTGCAATAGCTGAAGGATTAGCTCAACGTATTGTGCGTGGTGATGTTCCTGAGCCCTTGATGAACAGAAAGTTGATCTCCCTGGATATGGGTTCATTGCTTGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGACGCCGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTAGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAGGATCCTGCACTGGAGCGTAGATTTCAGCAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGGTATGAGTTGCATCATGGAGTCAAAATATCAGACAGTGCACTTGTTTCAGCTGCAGTTCTTGCAGATCGATACATTACAGAGCGCTTTTTACCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCGAAGCTGAAGATGGAGATAACCTCTAAGCCTACTGAATTGGATGAGATAGACAGGGCAATATTGAAATTGGAGATGGAAAAACTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTCGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCAGAACAATGGGACAATGAAAAAGTTTTTATGACACGAATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAACGTGATTATGACCTGAACCGTGCTGCTGAGCTCAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAACTGACTTCCGAAAGTCTGGGAAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTTAGCAAATGGACTGGTATACCATTGTCAAACTTCCAACAAACAGAGAGAGAAAAATTAGTCTTGCTGGAACAGGTTCTTCACAATAGAGTGGTTGGTCAGGATATCGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAACCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGAGCCCCTCCTGGTTATATTGGTTATGAAGAAGGAGGTCAGCTGACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTCCTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATATTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTAGCTTCACGAATTGTGTTGTGATTATGACTTCAAACATTGGTTCACATAATATACTTGAAACTCTTCGTAGCACACAAGATGATAAAACTGGAGTCTATGATAAGATGAAGAGACAAGTTGTTGAGTTGGCTAGGCAAACATTTCGTCCAGAATTCATGAATCGCATTGACGAATATATTGTGTTCCAGCCTTTGGATTCCAAACAGATAAGCAAAATAGTGGAGCTCCAGATGGAACGTGTGAAAAACAGGCTTAAGCAAAAGAAAATTGATCTTCATTTCACAGAAGAAGCTGTTAAACATCTTGGTGTACTGGGTTTTGATCCAAATTTTGGTGCAAGACCAGTTAAGAGAGTTATACAACAGTTAGTTGAAAATGAAATTGCTATGGGAATTCTTAGGGGAGATTTCAAAGAAGAGGACTCAATTATTGTGGATGTTGATGTGGCTCCATCAGGCAAAGAACGTTCTCTAAATAGACTACTTATTAAGAAGTTGGACAGCCCTGTTGCGGATGCCATGGTTGTCAATCACTAA 2934 0.4308 MAARRTPTLAKSLFAAVTASRTSRSRSARRLFSAITRASETSPNVLSRSQIVDALAANNVASAKFLSLSFTRSFHATNPSLRSAASSQVAQTEFTEMAWEGILGAVDAARVSKQQIVESEHLMKALLEQKDGLARRVFTKTGLDNTSVLQATDDFIAKQPKVTGDTTGPVIGSHLSSLLDNARKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEITLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELAKRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDNEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLTDFRKSGKSLLREEVTDLDITEIVSKWTGIPLSNFQQTEREKLVLLEQVLHNRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYIGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHNILETLRSTQDDKTGVYDKMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKQISKIVELQMERVKNRLKQKKIDLHFTEEAVKHLGVLGFDPNFGARPVKRVIQQLVENEIAMGILRGDFKEEDSIIVDVDVAPSGKERSLNRLLIKKLDSPVADAMVVNH* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0908 977 Gene3D - 237 430 IPR027417 -
Pvu9g0908 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 946 IPR027417 -
Pvu9g0908 977 SMART ClpB_D2_small_2 864 957 IPR019489 -
Pvu9g0908 977 Coils Coil 500 520 - -
Pvu9g0908 977 SMART AAA_5 286 430 IPR003593 -
Pvu9g0908 977 SMART AAA_5 689 831 IPR003593 -
Pvu9g0908 977 PANTHER ATP-DEPENDENT CLP PROTEASE 67 972 - -
Pvu9g0908 977 ProSitePatterns Chaperonins clpA/B signature 1. 382 394 IPR018368 GO:0005524
Pvu9g0908 977 ProSiteProfiles Clp repeat (R) domain profile. 89 234 IPR004176 -
Pvu9g0908 977 PANTHER BNAC09G42450D PROTEIN 67 972 - -
Pvu9g0908 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 637 IPR027417 -
Pvu9g0908 977 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 94 947 IPR017730 GO:0005737|GO:0009408|GO:0042026
Pvu9g0908 977 CDD AAA 663 818 - -
Pvu9g0908 977 ProSitePatterns Chaperonins clpA/B signature 2. 723 741 IPR028299 -
Pvu9g0908 977 Coils Coil 877 897 - -
Pvu9g0908 977 Pfam C-terminal, D2-small domain, of ClpB protein 864 944 IPR019489 -
Pvu9g0908 977 Pfam AAA lid domain 430 532 IPR041546 -
Pvu9g0908 977 Gene3D - 431 636 IPR027417 -
Pvu9g0908 977 Gene3D - 864 959 - -
Pvu9g0908 977 Coils Coil 560 580 - -
Pvu9g0908 977 Pfam ATPase family associated with various cellular activities (AAA) 292 425 IPR003959 GO:0005524|GO:0016887
Pvu9g0908 977 CDD AAA 269 426 - -
Pvu9g0908 977 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Pvu9g0908 977 Pfam Clp amino terminal domain, pathogenicity island component 105 156 IPR004176 -
Pvu9g0908 977 Coils Coil 587 621 - -
Pvu9g0908 977 Gene3D - 642 862 IPR027417 -
Pvu9g0908 977 Pfam AAA domain (Cdc48 subfamily) 688 857 IPR003959 GO:0005524|GO:0016887
Pvu9g0908 977 SUPERFAMILY Double Clp-N motif 93 244 IPR036628 -
Pvu9g0908 977 Coils Coil 522 549 - -
Pvu9g0908 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 693 711 IPR001270 GO:0005524
Pvu9g0908 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 738 756 IPR001270 GO:0005524
Pvu9g0908 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 767 785 IPR001270 GO:0005524
Pvu9g0908 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 800 814 IPR001270 GO:0005524
Pvu9g0908 977 Gene3D - 91 236 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0908 Pvu-Chr9 13781519 13790437 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0908 K03695 - gmx:100782242 1738.78