Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0906 ATGTTGAAGGTGTACGATGTAGGGGAACTCATCTTGCTCGCCAAGCACGTCAAAACCATAGAATCTCTCCGCCGCTTCCACGCGCTCGCGGTGACGTGCGGCCACTCCTCCAACCTCTTCATTGCTGCAAAGCTCATCGCTCTCTACGACTCTCTCCAAAACGATCACGTTTCGTGTTCCACCCTCTTCCACTCTCTTCCCTCCAAAGACACCTTCGTCTACAACTCCTTCCTCAAATCCCTCTTCTCCCGTTCTCTCTTCCCCCACGCTCTCACCCTCTTCTCACACATGACGCGCGCCTCCAACCTCTCTCCCAACCATTTCACTCTTCCCATCGTCGTCTCCGCCTCTGCGCACCTCTCGCTCCTTCCCCACGGCACGTCGCTCCACGCTCTCGCCTTTAAAACCGGCCTCTTCCATTCTTCAGCCACTTCCTTTGTGTCGTTTTACTCGCGTTGTGGTGAAATGGACCGTGCATGCAAGGTGTTTGATGAAATTCCTGTTCGGGATGTGGCTGCTTGGACAGCACTCATCATCGGCCACGTACATAATGGGGAGCCGGAGAAGGGCTTGAAGTGTCTCCGCGACATGCATGAGGTTGGTGAGGATACCCAGAAGCCCAACGTGAGAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAATCTCGGGGCTGCGAGAGAAGGCGCGTGCTTGCATGGGGTGGTTATTAAACACGGGGTTGCTTCTTTTCTACAGTCTTCCGTTTTGGCCATGTATTCCAAATGTGGGGTCCCTCGAGAAGCGTATCGAGCATTTTGTGAGGTGATTTACAAAGATCTTTTGTCTTGGACGTCCATCATCGGGGTTTGTGCGAGGTTTGGGATGATGGGGGAGTGTGTGAAGTTGTATAGAGAAATGCTGGAAAACGAAATACGTCCAGATGGGATTGTTATTGGTTGCATGCTTTCGGGGTTTGGTAATTCCATGGATGTGTCTCAAGGGAAAGCGTTTCATGGAGTGATTATAAGGAGACATTACGTGGATGATGAGAAAGTTGATGATTTGCTCTTGTTTATGTACTGCAAGTTTGGAATGTTAAGTTTGGCAGAGAGGATTTTTCCAATGTGTCGCGGGAGCGGAGAGTGCTGGAACTTTATGGTTTTTGGGTATGATAGAATAGGGAAGAGCGTGAAATGTGTTGAACTCTTCAGGGAGATGCAATGTTTGGGTATTCGTTCTGATTCAATTGGCGTAGTTTCAGCTGTTGCCTCGTGTGCTCAGTTGGGAGCAGTTAATTTAGGAAGGTCGATTCATTGCAACGTGATAAAGGGTTTCTTGGATGGTAACATCTCGGTCACCAACTCGCTCATAGAGATGTATGGAAAATGTGGTAAGATGACCTTTGCTTGGAGAATATTTAACAGGTCGCAGAGGGATGTTGTGTCGTGGAACACTTTGATTTCGTGTCATGTTCACATCAAGCAACATGAAGAGGCTGTAAATTTATTTAATAGAATGGTTAAAGATCAGCAACCCAATACAGCCACACTTGTGGTAGTGCTTTCAGCATGTTCTCACCTTGCATCTCTAGAGAAAGGAGAAAGAGTTCACCGCTACATAAATGAAAGCAGTTTTAGACTCAATTTACCTCTTGGCACAGCGTTGGTTGATATGTATGCTAAATGTGGTCAGCTGCAAAAGTCGAGAATGGTATTTGACTCTATGATGGAGAAGGATGAAATTTGCTGGAATGCAATGATTTCAGGCTATGGAATGAATGGATATGCAGAATCTGCTTTGGAAATATTCCGACGTATGGAGGAATCAAACGTTATGCCCAACGAAATTACCTTCCTCTCTCTTCTCTCAGCATGTGCCCATGCAGGACTTGCTGAAGAAGGGAAGTACGTGTTCGCGAGAATGCTGAGTTATTCATTGAGTCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTCAGGTAATCTGCAGGAAGCAAAAGCTATGGTCCTATCTATGCCTATTTCTCCAGACAGCGGTGTCTGGGGAGCTTTGTTAGGTCATTGTAAAACTTACAATCAAGTAGAGATGGGAATAAGTATTGCAACTTATGCTATTGACTCTGAACCAGAAAATGACGGGTACTATATAATGTTGGCCAATTTGTATAGCTCCATTGGGAGGTGGGAAGAAGCCGAAAATGTGAGAAGGACAATGAAAGAGAGATGTTTAATGGGAAAGAAAGCTGGTTGGAGTCTGCTCTGA 2253 0.4656 MLKVYDVGELILLAKHVKTIESLRRFHALAVTCGHSSNLFIAAKLIALYDSLQNDHVSCSTLFHSLPSKDTFVYNSFLKSLFSRSLFPHALTLFSHMTRASNLSPNHFTLPIVVSASAHLSLLPHGTSLHALAFKTGLFHSSATSFVSFYSRCGEMDRACKVFDEIPVRDVAAWTALIIGHVHNGEPEKGLKCLRDMHEVGEDTQKPNVRTWEGGFLACGNLGAAREGACLHGVVIKHGVASFLQSSVLAMYSKCGVPREAYRAFCEVIYKDLLSWTSIIGVCARFGMMGECVKLYREMLENEIRPDGIVIGCMLSGFGNSMDVSQGKAFHGVIIRRHYVDDEKVDDLLLFMYCKFGMLSLAERIFPMCRGSGECWNFMVFGYDRIGKSVKCVELFREMQCLGIRSDSIGVVSAVASCAQLGAVNLGRSIHCNVIKGFLDGNISVTNSLIEMYGKCGKMTFAWRIFNRSQRDVVSWNTLISCHVHIKQHEEAVNLFNRMVKDQQPNTATLVVVLSACSHLASLEKGERVHRYINESSFRLNLPLGTALVDMYAKCGQLQKSRMVFDSMMEKDEICWNAMISGYGMNGYAESALEIFRRMEESNVMPNEITFLSLLSACAHAGLAEEGKYVFARMLSYSLSPNLKHYTCMVDLLGRSGNLQEAKAMVLSMPISPDSGVWGALLGHCKTYNQVEMGISIATYAIDSEPENDGYYIMLANLYSSIGRWEEAENVRRTMKERCLMGKKAGWSLL* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0906 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Pvu9g0906 750 Gene3D Tetratricopeptide repeat domain 523 622 IPR011990 GO:0005515
Pvu9g0906 750 Gene3D Tetratricopeptide repeat domain 138 229 IPR011990 GO:0005515
Pvu9g0906 750 Gene3D Tetratricopeptide repeat domain 405 522 IPR011990 GO:0005515
Pvu9g0906 750 Pfam PPR repeat family 471 518 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat family 571 619 IPR002885 -
Pvu9g0906 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 502 IPR002885 -
Pvu9g0906 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Pvu9g0906 750 Pfam E motif 688 739 IPR046848 -
Pvu9g0906 750 Gene3D Tetratricopeptide repeat domain 238 381 IPR011990 GO:0005515
Pvu9g0906 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Pvu9g0906 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu9g0906 750 TIGRFAM PPR: pentatricopeptide repeat domain 474 501 IPR002885 -
Pvu9g0906 750 TIGRFAM PPR: pentatricopeptide repeat domain 173 201 IPR002885 -
Pvu9g0906 750 TIGRFAM PPR: pentatricopeptide repeat domain 609 642 IPR002885 -
Pvu9g0906 750 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Pvu9g0906 750 TIGRFAM PPR: pentatricopeptide repeat domain 275 307 IPR002885 -
Pvu9g0906 750 SUPERFAMILY TPR-like 470 730 IPR011990 GO:0005515
Pvu9g0906 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 521 - -
Pvu9g0906 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 426 749 - -
Pvu9g0906 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 428 - -
Pvu9g0906 750 Gene3D Tetratricopeptide repeat domain 623 750 IPR011990 GO:0005515
Pvu9g0906 750 Pfam PPR repeat 447 469 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat 375 404 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat 173 201 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat 144 168 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat 645 669 IPR002885 -
Pvu9g0906 750 Pfam PPR repeat 275 303 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0906 Pvu-Chr9 13772274 13776480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0906 144 750 Glycoside Hydrolase AT3G49170 30.337 2.69e-84 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0906 - - gmx:100780090 1283.86