Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0899 ATGGAGGACGATAAAATAGTTGGATACGTTACCGCGTACCTGAAGAAGAAAGGTTTCACACAAACCGAGAAGATTTTCCAAGAAGAGTTTCAGCACAACAAAACCACCAATTCATCTTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGAGTGGTCCCGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGTTTTATGGACCTTGTGGCGAAGGGACACGTTCAAGAAGCTCGGAATTTCTTCAATACTTTTCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACCCATCTGCAGGAAATGGAATTCGCTCACTCTCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATAAATGAGCACATTAACTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGACTCTCTTGAAGAACGGCTGGAAAAGGCAGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCATTTGAAGGGGGAAAGCAAGGTGGTGGTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGTAATGCAACTGGAAAGAGTGCAAAACCTGAAGCTAATACTGTACCTGCAGCTCCTCGAGTAAAGCCTGAACTCCCCTTACCCATAATCCCAACTGAGGTGGAACAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTAATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACCGCCTGTCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACCAAATGATCAAATGTTTGGGCAAGGTGTTGGGAAAAGACAGTATACACTGTTTCAAGGTCATTCAGGACCTGTTTATGCAGCCTCTTTTAGTCCTGTGGGAGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACCAAACTTAATGCCAACCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTGAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTTGTTGGTCATAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCAGCCTCACACCTTTGATTGGGCACACGTCCTGTGTCTGGTCCCTCGCATTCAGTTCTGAAGGTTCTGTTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAACGCTAACAGACTTAGATCACTGAAAACTCTGCCAACGAAATCTACCCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTCGCGGCTGGGGCTCTAGCAAAAAGTGGCTAA 2019 0.4492 MEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLQEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSFEGGKQGGGSVKKVKKDKGGNATGKSAKPEANTVPAAPRVKPELPLPIIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPPVSSLSQGENDTSPNDQMFGQGVGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRSLTPLIGHTSCVWSLAFSSEGSVLASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0899 672 CDD WD40 418 667 - -
Pvu9g0899 672 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Pvu9g0899 672 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Pvu9g0899 672 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Pvu9g0899 672 Pfam WD domain, G-beta repeat 415 450 IPR001680 GO:0005515
Pvu9g0899 672 Pfam WD domain, G-beta repeat 497 534 IPR001680 GO:0005515
Pvu9g0899 672 Pfam WD domain, G-beta repeat 582 618 IPR001680 GO:0005515
Pvu9g0899 672 Pfam WD domain, G-beta repeat 538 576 IPR001680 GO:0005515
Pvu9g0899 672 Pfam WD domain, G-beta repeat 457 492 IPR001680 GO:0005515
Pvu9g0899 672 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 453 492 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 537 576 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 411 450 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 341 380 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 495 534 IPR001680 GO:0005515
Pvu9g0899 672 SMART WD40_4 579 618 IPR001680 GO:0005515
Pvu9g0899 672 SUPERFAMILY Taf5 N-terminal domain-like 51 194 IPR037264 -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 581 - -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 539 - -
Pvu9g0899 672 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 671 IPR037783 -
Pvu9g0899 672 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Pvu9g0899 672 PANTHER CANNONBALL-RELATED 3 671 - -
Pvu9g0899 672 MobiDBLite consensus disorder prediction 277 291 - -
Pvu9g0899 672 MobiDBLite consensus disorder prediction 244 270 - -
Pvu9g0899 672 MobiDBLite consensus disorder prediction 244 309 - -
Pvu9g0899 672 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 189 IPR007582 -
Pvu9g0899 672 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Pvu9g0899 672 Gene3D - 461 544 IPR015943 GO:0005515
Pvu9g0899 672 Gene3D - 325 460 IPR015943 GO:0005515
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 381 IPR001680 GO:0005515
Pvu9g0899 672 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 585 IPR001680 GO:0005515
Pvu9g0899 672 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Pvu9g0899 672 CDD TAF5_NTD2 63 195 IPR007582 -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Pvu9g0899 672 Gene3D TFIID subunit TAF5, NTD2 domain 45 194 IPR037264 -
Pvu9g0899 672 SUPERFAMILY WD40 repeat-like 342 667 IPR036322 GO:0005515
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Pvu9g0899 672 Gene3D - 545 671 IPR015943 GO:0005515
Pvu9g0899 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0899 Pvu-Chr9 13682273 13691722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0899 359 637 Miscellaneous Gene Families AT5G08390 23.693 3.43e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0899 K03130 - gmx:100805953 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0430 1 4347676 4361633 Pvu9g0899 9 13682273 13691722 PCT