LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0894	ATGGGTCACGTTGGTTCCAGTAAGGATGGCACCAAGGCAGGGATGACCGCCGCGATGATGGACATCGACGGTGACGACGGCTTCGACGACGACCTGGGTGACCTCGACCCGACCAACGCCGAAATCCTCGAAGAATTCGGCGGAGAGGAGGCGTTCCGATACCACTGCAAGAAGTTTTCGATGCTGTTCTTTGAGGAGTACGGTCTGATCAGCCACCAAATCAACTCCTATAACCACTACGCCAACGTCGGCCTCCAGAGAACCTTCGATGGCTTCGGCGAACTGGTCGTCACGCCCGGCTTCGACCCTTCCAAGAAGGGAGCTAACGAGCACTACCGTTACGCCTCCGTCAAGTTCGGCAAGGTCACGCTAGACAAGCCCATGTTCTGGGGCGGTGAGGGCAACGCGCAGGAGTTTAAGATGCTTCCACGACACGCGCGGCTTCAGAGGATGACCTACGCTTCGAAAATAAAAATTTTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACAGGGAAGGAAGAGTACCTTGATAAGGAGATTCTGAAGGAAGATGAGAGGGAGATGATCATTGGGAGATTGCCTGTCATGGTTAAGTCGGATTTATGTTGGATGAATGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATCAAGGGTGCCGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGCGGCTTTGGGTTATGAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTAGGCAATTCTAGGAATGAAGAAGGGCAGAATGGAGACATGTTTCTTACTGTGTATTTTTTATCAGTTGAGGTTCCTGTGTGGGTATTATTTTTCGCTCTTGGTGTCACATCTGATAAAGATGTTGTAGATCTCATTGGTTGTGACAATGATGATGCCAGAATTCAGAATATTCTCCTTGCGTCTGTTTGTGATGCTGATGAGAAATGTGGAGCATTTCGGAGAGGTAGGAATGCAGTTCAATATTTAGAGAAGTATATAAAAAGTGTACAATTTCCACCTCCTGAGTCTATTGAGGAGTGCCTTGAAATGTATGTCTTTCCTGGAATTAGCGGCTTAAACAGAAAGGCACGCTTCCTTGCATATATGGTGAAGGGTCTCTTACTGGCATATACTGGCCGCAGAAAATGCGACAACAGGGATGATTTTCGTAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCACATAGCTCATGCTCGAAAGCGAATGTCAAAGGCATTGCAGAGGGACCTTTATGGAGAAAGGGATGTACGCCCAATTGAGCATTATCTTGATGCCTCAATAATTACAAATGGTCTGCAAAGGGCATTTTCAACAGGAGCATGGTCACATCCGTACAAAAGGATGGAAAGGATCTCTGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCCTACAAACCATGGCTGAGCTAAGAAGAGCGAGGCAGCAAGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATATGGCTGTCACTGGACTTGTAAGCACCGATGTATCTAATGCATCTGAATCTATACTGCCTACATTGTTGAATTGTGGAATGGAAGAACTTGTCAATGATACTACCACTCATATGGGAAACAAGGACAAAGTCTTCCTAAACGGTGATTGGGTTGGAGTGTGCCCTGATTCCAGTTGGTTTGTGGCTGAGCTACGAAGTGAAAGACGTAAAAATAAACTGCCTCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGTAATCTTCTCAGGATTAAAAGATTTAAATCCGACCGCTACTCTTTCCGGACTCTATTGGAAGAAGGTGTGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGTGTTCAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTGAAGTACACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTTCCATTTGCCAATCATGACCATGCAAGGAGGGTACTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATACCAGAATTGATACTTTGTCTCATCAGTTACACTATCCCCAGAGGCCCCTTTTTCAAACAATGGCTTCAGATTGTCTTGGAAAGCCAACCTCTCCACTGGGTCAAAGTAAAATACATCCAAAGGCAGAATTCTATAATGGGCAGAACGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCTTGGTGATGAACCGTGCGTCATTACAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATTGATAATAAGCAATCCTCAGAGAAGAAGCGAAAATCTGAAGACATTGTAAATTTTGGAAAGCTACAGAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAACTTGCAAAGTGGTGATATTATTATTGGACGGTGTGCTGAGTCTGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCTTCAAATGACGAGGGGAAAAATTTTGCGGCGGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGACAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTGGGATTTTTGGAGTGTCAGGAAAATTTCCCTTTCACCAGACAAGGCATTGTTCCTGATATTGTCATTAATCCGCATGCCTTTCCATCACGACAAACTCCCGGCCAGCTGCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACTGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAACGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGTCTGAAGACAAGGTGAAATTCCGCAACACTGGTCCTGTTCACCCTTTGACCCGACAGCCTGTAGCCGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAAATGGAACGTGATTGCTTGATAGCTCACGGTGCATCAGCCAACCTGTATGAACGCCTCTTTACTCTCAGTGACTCGTCTCAGATTCACATCTGCAGCGGATGCAAAAATGTTTCAAATGTGATCATGCGGCCAGTCTCTGGTGGCCGGAAAGTACGAGGACCTTATTGCCGCCACTGTGAATCTGCAGATGACATTGTGGTTGCCCATGTCCCTTACGGAGCAAAATTATTATGTCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG	3609	0.4503	MGHVGSSKDGTKAGMTAAMMDIDGDDGFDDDLGDLDPTNAEILEEFGGEEAFRYHCKKFSMLFFEEYGLISHQINSYNHYANVGLQRTFDGFGELVVTPGFDPSKKGANEHYRYASVKFGKVTLDKPMFWGGEGNAQEFKMLPRHARLQRMTYASKIKILVKVQVYVPKKVRSDKFKTGKEEYLDKEILKEDEREMIIGRLPVMVKSDLCWMNGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRNEEGQNGDMFLTVYFLSVEVPVWVLFFALGVTSDKDVVDLIGCDNDDARIQNILLASVCDADEKCGAFRRGRNAVQYLEKYIKSVQFPPPESIEECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMSKALQRDLYGERDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLNCGMEELVNDTTTHMGNKDKVFLNGDWVGVCPDSSWFVAELRSERRKNKLPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLRIKRFKSDRYSFRTLLEEGVIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNTRIDTLSHQLHYPQRPLFQTMASDCLGKPTSPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKQSSEKKRKSEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSGCKNVSNVIMRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC*	1203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g0894	1202	Gene3D	RNA polymerase Rpb2, domain 2	252	409	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	54	1199	-	-
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 5	673	719	IPR007647	GO:0006351
	Pvu9g0894	1202	Gene3D	RNA polymerase alpha subunit dimerisation domain	1086	1200	-	-
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 2	277	421	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	43	1199	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Pvu9g0894	1202	CDD	RNA_pol_B_RPB2	69	1198	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Pvu9g0894	1202	Gene3D	-	729	1085	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	Pfam	RNA polymerase beta subunit	68	458	IPR007644	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 3	500	557	IPR007645	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 6	728	1099	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	ProSitePatterns	RNA polymerases beta chain signature.	952	964	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	Gene3D	-	410	598	-	-
	Pvu9g0894	1202	Gene3D	-	62	244	-	-
	Pvu9g0894	1202	Gene3D	-	759	948	IPR014724	GO:0003899
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 7	1101	1199	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	Pfam	RNA polymerase Rpb2, domain 4	597	657	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
	Pvu9g0894	1202	PANTHER	DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED	43	1199	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0894	Pvu-Chr9	13610699	13616274	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0894	-		K16252	gmx:100815934	2194.08

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g0894	9	13610699	13616274	Pvu9g0894	9	13610699	13616274	ECH