Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0888 ATGGCTGTTGTAGTGCCCCTTTCTTCTACCTCTTGCTGTGCTTTCGGTGACACCAATGTTTATGCTATGAGCAATAATGGATTCTTTGGAGGAACCCCATTTGTCAAAATGAAATCTTTGCCTAATGGGTCTTTGGTAAACTGGAAGAAACATGGAAAAAGACAATTGGGTATTGGTGTCTTAGTGACAAGATGTGCCCCTGAAGTGGTTGCAGTAAATGGCAAGAGCAAAACTAGAGTGTCTTCTGAAGAAGTTATTGGCGTTTTGAAGTCAATTTTGGATCCCAATTCTGCTCTTTTGTATTTTAAGATGGTTTCCCAGTTGCCTAATCTTGTGCATACACCTGAAACATGTAATTACATGCTGGAGCTCCTGAGGGCTCATGGGAGAGTTGAGGATATGGTTTTTGTTTTTGATTTTATGCAAGAGCAAGTGATTAACAGGAATCCGAATACATATCTCACTATCTTTAAGGCTCTTTCGATTAAAGGTGGGATTCGGCAAGCACCATTTGCACTTGGAAAGATGAGGCAAGCTGGGTTTGTCTTGAATGCTTATTCATATAATGGACTGATTCATTTCCTGCTCCAACCTGGCTTTTGTAAAGAGGCTTTGAAGGTTTACAAAAGAATGATCTCGGAAGGGATGAAACCTAGTATGAAGACTTACTCAGCGTTAATGGTAGCATTGGGGAAGAGGAGGGAGACCGGAACCATTATGGATTTATTGGAAGAGATGAAAACTTTAGGTTTGAAGCCAAATATCTACACATATACCATATGCATTAGAGTGCTTGGGAGGGCAGGGAGAATCGATGATGCGTATGGGATTTTAAAGACAATGGACAATGAAGGATGCGGGCCGGATGTTGTCACTTATACGGTTCTAATTGATGCACTTTGTGTTGCAGGAAAACTTGATAAGGCCATGGAATTATACACAAAGATGAGAGCTAGCGGTCACAAACCAGATCAGGTGACTTACATTACTTTAATGGGCAATTTCGGTAATTATGGCAACTTGGAAATGGTGAAAAGATTCTGGAGTGAGATGGAGGCTGATGGTTATGCTCCTGATGTGGTTTCCTACACTATAATTGTTGAGGCTTTATGTAAGTCTGGAAAAGTTGATCAGGCATTTGATATATTAGATGTGATGAAAGTGAAAGGGATTTTTCCAAATCTTCATACTTACAACACGTTGATCTCTGGACTTTTGAACCTGAGAAAATTAGATGAGGCATTAGAGCTGTTCAACAATCTGGAATCTTTGGGTGTTGAACCAACTGCTTATTCATACGTTCTTTTTATTGACTACTATGGAAAGTTGGGTGATCCTGAAAAAGCTCTTGACACCTTTCAAAAAATGAAGAAGAGAGGTATTTTGCCTAGTATAGCCGCATGTAATGCATCTTTATATAGTCTTGCTGAAACAGGTAGGATCAGAGAAGCAAGATATATATTCAATGATCTTCACAAGTGTGGGCTTTTACCTGATTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGGCAAATAGACAAATCTACAAAACTTTTGACTGAGATGTTAAGTGAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGACCGAGTTGATGAGGCATGGAAAATGTTTGGGAGATTGAAGGATTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAGGGAAAACTCCGGAGGGCCCTTGATTTGTTTGGGAGTATGAATGAGTCTGGATGTCCTCCAAACACAGTGACTTTTAACGCACTCCTTGATTGTCTTTGCAAGAATGATTCAGTTGATTTGGCTTTGAAAATGTTCTGTAGAATGACAATCATGAACTGTAGTCCTGATGTTCTGACTTATAACACTATTATCTATGGCTTGCTCAAGGAAGGCAGGGCTGATTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCCCCTGATCCTGTAACTTTGTACACCCTCCTTCCTGGTGTTGTAAAGCATGGAAGGATTGAGGATGCAATCAAGATTGTCATGGAATTTGTAAATCAACCAGGTTTACAGACAAGTAGTCAATTCTGGGGAGAATTAATGGAATGTATTTTAATTGAAGCAGAAATAGAAGAGGCCATTTCATTTGCTGAAGGATTGGTGTGCAATTCTATTTGCCTAGATGATAATTTGATAATACCTTTTATTAGAATCCTATGCAAGCGGAACAAGGCTCTTGATGCTCAAAATTTGTTTGACAAATTCACCAAAACTTTGGGAATTCACCCTTCCTCGGAATCATATAACTGCTTGATAGATGGGCTTCTTGGAAGTAATATCACTGAACCAGCTTTCAAACTTTTTATTGAGATGAAGAATGCAGGTTGTTCCCCGAATATTTTCACCTACAACTTGTTGCTTGATGCTCATGGTAAGTCAAAGAGGATTGATGAACTTTTTGAACTGTACAATAACATGCTCTGTAGGGGATGTAAGCCGAATACTATAACCCATAATATCGTCATTTCTGCCCTTGTGAAATCTAAAAACATAAATAAGGCATTAGATTTATACTATGATCTCGTGAGTGGTGATTTCTTTCCCACTCCTTGTACATATGGTCCTCTTATAGACGGCCTTTTAAAGGCTGGAAGATTAGAAGAAGCAATGAATATTTTTGAGGAGATGTCAGACTATCATTGCAAGCCCAACTGTGCTATTTATAATATTCTCATCAACGGATTTGGGAAAGCAGGTAACGTTGACATTGCTTGTGATTTGTTCAAAAGGATGGTTAAGGAAGGGATAAGGCCAGACTTGAAGTCTTATACCATTCTTGTAGAATGCCTGTGCATGAGTGACAGAGTTGATGATGCCGTGCACTACTTTGAGGAACTAAAGTTGACTGGCCTTGACCCTGATACTGTTTCTTATAATCTTATGATCAATGGCCTTGGAAAATCGCACAGGTTTGAGGAAGCTCTTTCTCTTTTCAGTGAAATGAAAAATAGGGGAATCACTCCTGATCTTTATACTTACAATTCATTGATTCTTCATTTTGGAAATGCTGGAATGGTGGACCGAGCCGGAAAGATGTTCGAGGAACTGCAGCTTATGGGTCTTGAACCTAATGTCTTCACTTACAATGCTCTCATTCGTGGGCATACTATGTCAGGGAACAAAGATCGAGCCTTTTCTGTCCTCAAGAAGATGATGGTTGTGGGGTGTAGCCCCAATGCAGGAACATTTGCTCAATTGCCTGATAAATGTTGA 3321 0.393 MAVVVPLSSTSCCAFGDTNVYAMSNNGFFGGTPFVKMKSLPNGSLVNWKKHGKRQLGIGVLVTRCAPEVVAVNGKSKTRVSSEEVIGVLKSILDPNSALLYFKMVSQLPNLVHTPETCNYMLELLRAHGRVEDMVFVFDFMQEQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIHFLLQPGFCKEALKVYKRMISEGMKPSMKTYSALMVALGKRRETGTIMDLLEEMKTLGLKPNIYTYTICIRVLGRAGRIDDAYGILKTMDNEGCGPDVVTYTVLIDALCVAGKLDKAMELYTKMRASGHKPDQVTYITLMGNFGNYGNLEMVKRFWSEMEADGYAPDVVSYTIIVEALCKSGKVDQAFDILDVMKVKGIFPNLHTYNTLISGLLNLRKLDEALELFNNLESLGVEPTAYSYVLFIDYYGKLGDPEKALDTFQKMKKRGILPSIAACNASLYSLAETGRIREARYIFNDLHKCGLLPDSVTYNMMMKCYSKAGQIDKSTKLLTEMLSEGCEPDIIVVNSLIDTLYKADRVDEAWKMFGRLKDLKLAPTVVTYNILLTGLGKEGKLRRALDLFGSMNESGCPPNTVTFNALLDCLCKNDSVDLALKMFCRMTIMNCSPDVLTYNTIIYGLLKEGRADYAFWFYHQMKKFLSPDPVTLYTLLPGVVKHGRIEDAIKIVMEFVNQPGLQTSSQFWGELMECILIEAEIEEAISFAEGLVCNSICLDDNLIIPFIRILCKRNKALDAQNLFDKFTKTLGIHPSSESYNCLIDGLLGSNITEPAFKLFIEMKNAGCSPNIFTYNLLLDAHGKSKRIDELFELYNNMLCRGCKPNTITHNIVISALVKSKNINKALDLYYDLVSGDFFPTPCTYGPLIDGLLKAGRLEEAMNIFEEMSDYHCKPNCAIYNILINGFGKAGNVDIACDLFKRMVKEGIRPDLKSYTILVECLCMSDRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSHRFEEALSLFSEMKNRGITPDLYTYNSLILHFGNAGMVDRAGKMFEELQLMGLEPNVFTYNALIRGHTMSGNKDRAFSVLKKMMVVGCSPNAGTFAQLPDKC* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0888 1106 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 997 1085 - -
Pvu9g0888 1106 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 55 927 - -
Pvu9g0888 1106 PANTHER PROTON GRADIENT REGULATION3-LIKE PROTEIN 924 1025 - -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Pvu9g0888 1106 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 997 1085 - -
Pvu9g0888 1106 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 924 1025 - -
Pvu9g0888 1106 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 55 927 - -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 422 492 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 349 421 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 493 561 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 1054 1105 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 985 1053 IPR011990 GO:0005515
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 669 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Pvu9g0888 1106 Pfam Pentatricopeptide repeat domain 175 233 IPR002885 -
Pvu9g0888 1106 Pfam Pentatricopeptide repeat domain 1048 1100 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Pvu9g0888 1106 SUPERFAMILY HCP-like 405 632 - -
Pvu9g0888 1106 Pfam PPR repeat 882 913 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat 250 281 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 955 989 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 89 235 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 562 720 IPR011990 GO:0005515
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1025 1059 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 920 954 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1060 1094 IPR002885 -
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 866 984 IPR011990 GO:0005515
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 236 348 IPR011990 GO:0005515
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Pvu9g0888 1106 SUPERFAMILY HCP-like 865 1088 - -
Pvu9g0888 1106 Pfam PPR repeat 432 461 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat 538 564 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat 783 812 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 638 685 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 919 967 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 288 333 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 358 406 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 568 617 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 498 535 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 814 863 IPR002885 -
Pvu9g0888 1106 Pfam PPR repeat family 989 1033 IPR002885 -
Pvu9g0888 1106 Gene3D Tetratricopeptide repeat domain 731 865 IPR011990 GO:0005515
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 468 500 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 186 219 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 887 921 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 852 885 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 1062 1096 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 923 955 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 642 668 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 501 535 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 606 640 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 992 1025 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 783 816 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 1027 1061 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 537 569 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 817 851 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Pvu9g0888 1106 TIGRFAM PPR: pentatricopeptide repeat domain 958 991 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 885 919 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 990 1024 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Pvu9g0888 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0888 394 992 Glycosyltransferase AT1G05670 26.066 1.65e-53 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0888 - - gmx:100778358 1972.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0888 9 13576815 13581329 Pvu9g0888 9 13576815 13581329 ECH