LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0871	ATGCTTGCCTCGTTAGTGTCCTCACCATCATGGGATCTCAAATGGCTCCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGACTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACACCACCAGCAGCACCACCATCGCCACGACGCCATGCCCGGTCTTCCCATGGACGATTCTGTATGCGCCGTTTGTCGCAACCCCGGCAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTACTGTTCACAAGCGTGCCAACAGGCGCACTGGCAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAGATGCAAGGAGTTTCACAAACTGGATTAACTAATCGAGGGTTCAAAGCTTCTGCTGCAGTGAATAGAAGTACGACATCAATTGCACTCATTCCTGAATGTGGTCGCGGAATTTCCAGGCCTATTAAGCAGCCTAAAGATGTTCTTTTTCCTTATGATGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCATGTGGACTGTTGAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTTTCTTTCACAAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGCGAATGCTGTCATAACGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAGGCAAGGCTAAGTTCTAAAGCGTTTTCTCCAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCCATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTTCCTCCGAAGCATCAAGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGACAAGAATTCAAATCAATATGAGAATATGATGGACTTGACGGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGACGGGTGCAAGGACTATGTCAAGGCATGGAAACGTCTTACGGTTAAACGAGCACCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAGCTTTCCCGGAGACTTTAGACCTTTGTCCTTACATGAGTGAAGTTGGAGATGGATCTGATATGTATAAGCTATATGCTGTTGTGGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTAGGGTGGAGTTGGAAGAGGTGCTTTCTCAGGGTGCTTATATGCTGTTGTATAGCAGGGTTCATGCTCGAGCATCAGGGCTTCAAAGCATCGTCTCGTCAGAGACAGCAGAGGTGCAGCCTAGCCCAACCAAACAAGCTAAATGCCTCCTGGAACTGAAAACTGACACTTACAGTGGAGGATGTGAGTCCTCTCCATCTAACAGTAGTCCAGAGGTGATGGTTCTCTGTGAAAACATGCCTTTGACAGAAATGGACTCTGGAGTTAAAAGAGAGCAGTTGAAGGATGTTGAAATAATTGATGTAAATGCTAATGGGTCTGTATGTAATGGTGTCGATACATCTAATATGCACGGTTTTGAAGCTGTCAAAGATCTGGGGGACGTAGAAGATTCAGATGAATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAGTGATTTGGCCAAGTCGAGTCCTACTTCGTGTTTGCCTAATGGCTCTTCTGTTTCATTGGATTATGAAAACGCAAGGGAAGATTCAGATTCAAATGATGTAGATGCGATCAGAAGCAGAGTAACAGCAAATGGCTTTGCAAATCATAGCAATGGTTATGTCAGTGCAAATAAATATGATGATGTCCCAGTCGAAGATGGTGACGTTTCTTTTTCCACTGAAACAACACCCTCAGCTGAAAAGCATCAATTTAAGGGGAGATTGGGTTCCGACAATTATGAAGGTGACAAGGGAAACAGAGTTACGAAAGTGGAAATATGA	2184	0.4386	MLASLVSSPSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEHHQQHHHRHDAMPGLPMDDSVCAVCRNPGSKKCSRCKSVRYCSQACQQAHWQSEHKMRCKEFQMQGVSQTGLTNRGFKASAAVNRSTTSIALIPECGRGISRPIKQPKDVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKARLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKHQETTLIQHIFGGHLQSEVICTECDKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLCPYMSEVGDGSDMYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVVRVELEEVLSQGAYMLLYSRVHARASGLQSIVSSETAEVQPSPTKQAKCLLELKTDTYSGGCESSPSNSSPEVMVLCENMPLTEMDSGVKREQLKDVEIIDVNANGSVCNGVDTSNMHGFEAVKDLGDVEDSDESNTCSSVLEEISVCMEEQDDSDLAKSSPTSCLPNGSSVSLDYENAREDSDSNDVDAIRSRVTANGFANHSNGYVSANKYDDVPVEDGDVSFSTETTPSAEKHQFKGRLGSDNYEGDKGNRVTKVEI*	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g0871	727	Gene3D	-	65	116	-	-
	Pvu9g0871	727	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19	22	657	-	-
	Pvu9g0871	727	MobiDBLite	consensus disorder prediction	688	727	-	-
	Pvu9g0871	727	Pfam	MYND finger	73	110	IPR002893	-
	Pvu9g0871	727	Gene3D	Cysteine proteinases	178	497	-	-
	Pvu9g0871	727	SUPERFAMILY	Cysteine proteinases	178	490	IPR038765	-
	Pvu9g0871	727	Pfam	Ubiquitin carboxyl-terminal hydrolase	182	485	IPR001394	GO:0004843\|GO:0016579
	Pvu9g0871	727	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	22	657	-	-
	Pvu9g0871	727	SUPERFAMILY	HIT/MYND zinc finger-like	70	113	-	-
	Pvu9g0871	727	MobiDBLite	consensus disorder prediction	617	653	-	-
	Pvu9g0871	727	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	182	488	IPR028889	-
	Pvu9g0871	727	ProSiteProfiles	Zinc finger MYND-type profile.	73	110	IPR002893	-
	Pvu9g0871	727	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	183	198	IPR018200	GO:0004843\|GO:0006511
	Pvu9g0871	727	MobiDBLite	consensus disorder prediction	701	727	-	-
	Pvu9g0871	727	CDD	Peptidase_C19E	181	486	-	-
	Pvu9g0871	727	ProSitePatterns	Zinc finger MYND-type signature.	73	110	IPR002893	-
	Pvu9g0871	727	MobiDBLite	consensus disorder prediction	625	643	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0871	Pvu-Chr9	13421157	13429147	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0871	12	545	Miscellaneous Gene Families	AT4G31670	61.495	0.0	670

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0871	K11855		-	gmx:100810577	1167.14