Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0859 ATGCTGTTGCGACTACGAGCCACTTCCACTGCCCACGCATTAACCCCACGCGCTCACCTCATCCATTCCCATTCCTTCTCCTTCTCACATCCACACTCTCCACCTCAATGGTTCTCCATCCTCCGCCACGCCATCGCCGCCTCCGACCTCCCCCTCGGGAAGCGCGCCCACGCCGGCATCTTAACGTCGGGCCACCATTCCGAACGTTTCCTCACCAACAACCTCATCACCATGTACGCCAAATGCGGCTCCCTCTCCTCCGCGCGCAAACTGTTCGACGCAACGCCCCACGATGCCAGAGACCTCGTAACCTGGAACGCCATCCTCGCCGCCTACGCCCAAGCAGACAACCCCTTCGACGGCTTCCACCTCTTCCGGCTCCTCCGCCGCTCTGCCGTGTCCACCACGCGCCACACTCTCGCCCCCGTCCTCAAAATGTGCCTCCTCTCCGGTTCCTCCTCCGCCTCCGCGTCCCTCCACGGTTACTCCCTTAAGATCGGCTTACTATGGGACGTGTTCGTGGCCGGGGCTCTCGTCAACATCTACTCCAAGTTCGGACGAATCAGAGAGGCGCGTCTTTTGTTCGATGGAATGGCCGTGAGGGACGTTGTGCTCTGGAACCTCATGATGAAGGCCTACGTCGACATCTGCCTCGAACACGAAGCGTTGCTTCTCTTCTCAGAGTTTCACCGAACGGGATTGCGTCCCGACGACGTCACTCTTCGTACTCTCACGCGGGTTGGTATTAGTAGAAACACTGTTTTCGAATCGCACTTGGAGCAGCTTCGAGCTTATGCCACAAAATTGTTTATACGCGACGATGATGATTCGGATGTTATTGCATGGAACAAGACATTGTCTCGGTGTCTTCAGAGAGGTCAAGCTTGGGAGGCTGTTGATTGTTTCGGGGATATGTTAAAGTCAAGTGCTGCCTGTGACAGCTTGACTTTTGTTGTGATGTTGTCTGTGGCAGCCAGTTTGAATTGCCTTGAACTGGGGAAGCAGATTCACGGTGCTGTCGTGAGGATGGAACTGGATCAAGTTGTCTCTGTTGGAAACAGCCTCATTAATATGTATGTTAAGTCTGGTTCAGTTTCTCGTGCGAGATCTGTGTTTAGTCAAATGAATGAAGTGGATTTGATATCATGGAACACCATAATATCTGGCTCTGCACTGAATGGTTTGGAGGAGTGTTCTGTTGGGTTCTTTGTTGATTTATTACGTGATGGCCTGTTGCCGGATCAATTCACTATTGCGAGCGTTTTGAGGGCTTGTTCCTCTCTTGAACAAGGTTGCCATCTTGCCACACAGATTCATACTCACGCAATGAAAGCTGGTGTTGCCTTAGATTCGTTTGTTTCAACAGCTCTTATTGATGTCTATTCCAAGAGTGGGAAGACGGAGGAGGCCGAATTTCTTTTTGTTAACCAAGATGATTTGGCATCTTGGAATGCTATGATGCATGGGTACATAATCCGTGATGATTTTCACAAGGCATTGAGGCTTTATATGATATTGCATGAGAGTGGAGAAAAAGTGGATCAGATTACTCTGGCGAATGCAGCTAAAGCTGCTGGGGGATTGGTGGGGCTTCTACAAGGGAAGCAAATTCATGCTGTTGTGGTAAAAAGAGGGTTTAATTTAGATTTGTTTGTCCTTAGTGGTGTTCTTGACATGTATCTAAAATGCGGAGAGGTGGAAAGTGCAAGCAGAGTTTTCAGTGAGATATCCTCACCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGATCAAGCTCTATCCACATACCATCAGATGAGGCTTTCCAGGGTGCAGCCTGACGAGTATACCTTTGCTACCCTTGTCAAGGCTTGTTCTCTTTTAACAGCATTGGAACAAGGGAGACAGATTCATGCAAATATTGTAAAACTAAATTGTGCTTTTGATCCTTTTGTAATGACCTCACTTGTTGATATGTATGCCAAGTGTGGGAACATAGAAGAGGCACGTGGTTTGTTTAGAAGAATGAATACAAAGAGGATTGCCTCGTGGAATGCCATGATAGTAGGATTAGCTCAACATGGAAATGCTGAGGAAGCCCTCCGGTTTTTCAAAGACATGAAATCCAGGGGTTTATTGCCGGATAGAGTTACTTTTATAGGGGTTCTTTCTGCGTGCAGCCACTCTGGTTTGATATCCGAAGCTTATGAGAATTTTTATTCCATGCAGAAAAACTATGGTATTGAACCTGGGATCGAGCACTATTCTTGTCTTGTTGATGCCCTAAGCCGAGCGGGGCAGCTACTGGAAGCTGAAAAGGTCATTTCATCAATGCCTTTTGAAGCTTCTGCTTCAATGTATAGAACGCTGCTTAATGCCTGTAGGGTTCAGGTAGACAAAGAGATAGGAAAACGTGTAGCAGAGAAGCTTTTGACCTTGGAGCCATCTGATTCAGCAGCTTATGTTCTTTTATCCAATCTTTATGCCGCTGCTAACCAATGGGAAAATGTGGTGAGTGCCAGAAAAATGATGAGAAAAGTAAATGTGAAGAAGGATCCGGGGTTTAGTTGGGTAGATTTGAAGAACAAAGTGCATTTGTTCGTAGCTGGCGATAGGTCACATGAAGAAACTGGTGTGATATATAATAAGTTGGAGTCCGTTATGAAGAGGATCAGAGAAGAAGGATATGTCCCTGATACAGACTTTGCACTTGTTGATGTAGAAGAAGAAGATAAAGAGTGTTCTTTGTATTATCACAGTGAGAAGCTAACAATAGCTTATGGACTCATAAAAACTCCACCATCCACTACATTAAGGGTAATTAAAAACCTCAGAGTATGTGGAGATTGCCATAATGCAATCAAATATATATCAGAGGTTTTTAAGCGTGAAATTGTTTTGAGAGATGCAAATCGATTTCATCATTTCAGGAGTGGGATCTGCTCTTGTGGCGATTACTGGTGA 2967 0.4644 MLLRLRATSTAHALTPRAHLIHSHSFSFSHPHSPPQWFSILRHAIAASDLPLGKRAHAGILTSGHHSERFLTNNLITMYAKCGSLSSARKLFDATPHDARDLVTWNAILAAYAQADNPFDGFHLFRLLRRSAVSTTRHTLAPVLKMCLLSGSSSASASLHGYSLKIGLLWDVFVAGALVNIYSKFGRIREARLLFDGMAVRDVVLWNLMMKAYVDICLEHEALLLFSEFHRTGLRPDDVTLRTLTRVGISRNTVFESHLEQLRAYATKLFIRDDDDSDVIAWNKTLSRCLQRGQAWEAVDCFGDMLKSSAACDSLTFVVMLSVAASLNCLELGKQIHGAVVRMELDQVVSVGNSLINMYVKSGSVSRARSVFSQMNEVDLISWNTIISGSALNGLEECSVGFFVDLLRDGLLPDQFTIASVLRACSSLEQGCHLATQIHTHAMKAGVALDSFVSTALIDVYSKSGKTEEAEFLFVNQDDLASWNAMMHGYIIRDDFHKALRLYMILHESGEKVDQITLANAAKAAGGLVGLLQGKQIHAVVVKRGFNLDLFVLSGVLDMYLKCGEVESASRVFSEISSPDDVAWTTMISGCVENGQEDQALSTYHQMRLSRVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEEARGLFRRMNTKRIASWNAMIVGLAQHGNAEEALRFFKDMKSRGLLPDRVTFIGVLSACSHSGLISEAYENFYSMQKNYGIEPGIEHYSCLVDALSRAGQLLEAEKVISSMPFEASASMYRTLLNACRVQVDKEIGKRVAEKLLTLEPSDSAAYVLLSNLYAAANQWENVVSARKMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETGVIYNKLESVMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLTIAYGLIKTPPSTTLRVIKNLRVCGDCHNAIKYISEVFKREIVLRDANRFHHFRSGICSCGDYW* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 30 156 IPR011990 GO:0005515
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 279 428 IPR011990 GO:0005515
Pvu9g0859 988 Pfam PPR repeat family 682 728 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat family 579 626 IPR002885 -
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 680 IPR002885 -
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 429 526 IPR011990 GO:0005515
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 157 265 IPR011990 GO:0005515
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 533 628 IPR011990 GO:0005515
Pvu9g0859 988 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 232 981 - -
Pvu9g0859 988 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 245 - -
Pvu9g0859 988 Pfam E motif 800 860 IPR046848 -
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Pvu9g0859 988 PANTHER - 232 981 - -
Pvu9g0859 988 PANTHER - 37 245 - -
Pvu9g0859 988 Pfam PPR repeat 177 200 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 353 377 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 73 93 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 755 779 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 455 474 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 204 231 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 103 131 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 654 680 IPR002885 -
Pvu9g0859 988 Pfam PPR repeat 482 510 IPR002885 -
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 482 514 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 684 716 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 582 616 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 353 376 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Pvu9g0859 988 TIGRFAM PPR: pentatricopeptide repeat domain 655 677 IPR002885 -
Pvu9g0859 988 SUPERFAMILY TPR-like 610 839 IPR011990 GO:0005515
Pvu9g0859 988 Gene3D Tetratricopeptide repeat domain 629 748 IPR011990 GO:0005515
Pvu9g0859 988 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Pvu9g0859 988 Pfam DYW family of nucleic acid deaminases 896 988 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0859 Pvu-Chr9 13242846 13246489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0859 196 988 Glycoside Hydrolase AT3G49170 34.568 1.59e-162 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0859 - - vra:106761362 1801.56