Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0828 ATGGCTCAGGCATTTGGAAAAGCCATAGCAAAACCTTGTTCTACTTCCTCTTCTTCTTCATCCACCATTCCAATCCCAAATCTCTTTCTCATAACCTCCATAACCTCAATCCTTCAAACCCTAAATCCCCAAATTCCAGATTTCTCACCTCTCACAAAATTCTCTCCTCACCTCACCCCAGACATTGTCGTTCAGGTGATCAGGAACCAAAAGAACCCACACCACGCCCTTCACTTCTTCAACTGGGCCTCCAATCCCATCCCCAACCCTAAAAACTACTCCCACACCCCCTTCTGCTACGCCGCCATCACCGATCTCTTGCTCTCCCACTCCCTCTTCTCCACCGCCTACTCCCTCCTGCGCCACTCCAACAAACTCTCCGACTTCCTCATCTGCAGATTCATCAACGCTCTCGGCCACTGCGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAAAACTTGGGAACAGGACGCCGCGTCTTCTCGTGCAATGCCATCTTGGGCGTGCTCGTCAGGGCCAACCGTATTAATTTTGCCAAGGCCATCTACGATCAGGTCCTCGCAGAAGCTGTGGTGGAACCTGATGTTTACACTCACACCACTATGATTCGTGGGTTTTGCAAAGTGGGGATGGTCGCGAGTGCGCGCAAGGTGTTCGACGAAATGCGCTGCGAACCCAACATGGTTACTTACAACACGTTGATTCACGGGTTTTGTAAGAGGGGTGACATGGAGGGTGCCAGGTGGGTTTTTGACAGAATGGTGGAGAGTAAGAGTTGTGAGCCGGATGTGGTGAGTTTCACCACTTTGATTTATGGGTATTCGAAGAGAGGTGAGTTCAAAAAGGCGGTGGAGTGTCTGAAGGAGATGATGGAACGAGGGTGTTCTCCGAATGTTGTGACCTACAATGCGTTGGTTGAAGGTCTTTGTTTGAGCGGAGAAGTGGATGAGGCAAAGAAGATGATGAGTAGGATGCGGTTGAATGGTTTGAAGGACAATGTCGCCACAAACACTAGCTTGTTGAAGGGGTTGTGTATCGTGGGAAAGTCTGATGAAGCTTTTAAGCATTTGAGGGAAATGGTTAGTCGGGGGATGAAGCCGGATGTGAAAGCATATGGGGTTGTTGTGAATGAGTATTGCAAGATTGGAAAGCCAAGAGAAGCAGTCTCACTTCTGAGAGAAATGGTGACGAGGGGTGTTAAGCCAAGTGTGTCAAGCTTCAATGCTGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGGGTTCTTCTTTTGAAGCAGATGAGTCAGATGCGATGCTCCCCCAACTTCTTGTCATATTGCATATTGATATGTGGCCTCTGTAAAGTGAAGGGTAGGATGCAGGCAGTTGAAGAGCTTGTTTCGGACATGCTTCAGAATGGACATAACCTGGATGCCACTATGTATAGCTGCTTACTTGAGGGATATTGTGAAGACGGGGACGAAGAAATGGCACTAAAGACATTTTATGACCTTATGAACAAGAATTTTGTAATCAAACAAGACATTTTCTGCACTTTTGTGAAGGTGTTGTGTGCAAAGGGCAAATTGAAAGAGGGGGAGACAGTGTTTGAGGGGATGCTTGTTCAGGGGATTCCAGTTAAGTGGGAAAGCTGA 1653 0.4791 MAQAFGKAIAKPCSTSSSSSSTIPIPNLFLITSITSILQTLNPQIPDFSPLTKFSPHLTPDIVVQVIRNQKNPHHALHFFNWASNPIPNPKNYSHTPFCYAAITDLLLSHSLFSTAYSLLRHSNKLSDFLICRFINALGHCGDIRGAIHWFHKAKNLGTGRRVFSCNAILGVLVRANRINFAKAIYDQVLAEAVVEPDVYTHTTMIRGFCKVGMVASARKVFDEMRCEPNMVTYNTLIHGFCKRGDMEGARWVFDRMVESKSCEPDVVSFTTLIYGYSKRGEFKKAVECLKEMMERGCSPNVVTYNALVEGLCLSGEVDEAKKMMSRMRLNGLKDNVATNTSLLKGLCIVGKSDEAFKHLREMVSRGMKPDVKAYGVVVNEYCKIGKPREAVSLLREMVTRGVKPSVSSFNAVFRVLVDEGKIDEGVLLLKQMSQMRCSPNFLSYCILICGLCKVKGRMQAVEELVSDMLQNGHNLDATMYSCLLEGYCEDGDEEMALKTFYDLMNKNFVIKQDIFCTFVKVLCAKGKLKEGETVFEGMLVQGIPVKWES* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 259 328 IPR011990 GO:0005515
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 401 471 IPR011990 GO:0005515
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 329 400 IPR011990 GO:0005515
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 472 541 IPR011990 GO:0005515
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 192 258 IPR011990 GO:0005515
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat 480 508 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat 516 544 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat family 265 313 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat family 405 454 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat family 336 384 IPR002885 -
Pvu9g0828 550 Gene3D Tetratricopeptide repeat domain 63 191 IPR011990 GO:0005515
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Pvu9g0828 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 27 541 - -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Pvu9g0828 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 27 541 - -
Pvu9g0828 550 SUPERFAMILY TPR-like 136 433 IPR011990 GO:0005515
Pvu9g0828 550 Pfam PPR repeat 195 226 IPR002885 -
Pvu9g0828 550 Pfam PPR repeat 227 258 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 232 267 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 480 510 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 303 333 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 515 545 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 200 228 IPR002885 -
Pvu9g0828 550 TIGRFAM PPR: pentatricopeptide repeat domain 341 372 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 476 IPR002885 -
Pvu9g0828 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 265 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0828 139 549 Glycosyltransferase AT1G05670 31.010 6.71e-65 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0828 - - gmx:100802054 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0828 9 12954269 12955921 Pvu9g0828 9 12954269 12955921 ECH