Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0820 ATGGCGGATCCCTACTACTCGTATGGTGCTCCGGCAGCCGCGGACGGAGCAAGCATTGGGAGGACCAGCTTCGCTGGTTATATTCCAACGGAGCCTTCAAATTCCACTGAATTGCGGGGTATTGGATCAGATTACCTGCAGAGAGACATAGGCTTGTTTTATAGTGCTGATGATACTTTGGGATCTAGGGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTCGCAGATCCTGAGCTGACTAAAAAACGAGATATGGCACCACTAGGTATTAGTCATGGTGTTTCTGATGTAAACAGTAAAAGAGCGTCATCTAAAAGCAGTTACGATGGCCTGCCCGCAGCAGACTCCAACATTCTGTTTGTTGGTGGACTTCCAAATAACTGCACCAGAAGGGAAGTTGGGCATCTTTTCCGCCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGCGGTGACAAGGCTGTGACTTTGTGTTTTGTGGAGTTTCTTGACTCCAAATGTGCTCTCACTGCCCTGGAAGCCCTGCAAGGGTACAAGTTTGATGATAAATTGCCTGACTCGCCAACCCTAAAAATACAGTTTGCGCACTTCCCATTTCGTCTACCGTCTGAACATGGCAACAGCTTAACAGCATGA 657 0.4734 MADPYYSYGAPAAADGASIGRTSFAGYIPTEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPELTKKRDMAPLGISHGVSDVNSKRASSKSSYDGLPAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAVTLCFVEFLDSKCALTALEALQGYKFDDKLPDSPTLKIQFAHFPFRLPSEHGNSLTA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0820 218 MobiDBLite consensus disorder prediction 91 110 - -
Pvu9g0820 218 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 209 - -
Pvu9g0820 218 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Pvu9g0820 218 CDD RRM_RBPMS_like 118 200 - -
Pvu9g0820 218 PANTHER PROTEIN COUCH POTATO 13 209 - -
Pvu9g0820 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Pvu9g0820 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 204 IPR000504 GO:0003723
Pvu9g0820 218 Gene3D - 114 204 IPR012677 -
Pvu9g0820 218 SMART rrm1_1 119 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0820 Pvu-Chr9 12898554 12902784 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0820 - - gmx:100809186 392.504