Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0787 ATGGCGGACGAAGCCCACTATTCATCTCCCAACGACTCTACGCCCCTCAAACGCAAGTATGAAGACCAATCCTCCGATAGACCCACCGGCTTCTCCGCCGGCCCCGCTACCGGCATCGAGCTTGCCAAGCAGCGTGCTCAAGAAGTCGCCACTCGCCTCCTCAGCGTTGCTCCTCCTCCCCCGCTCGACGCCAAGCGTGCCAAACCCGATAACGGCGCTCCTACCTCCGGCTTCGATTCTTACGATGCGAAGCCTCAGTACTCAGCCGTTCCTCCCGTCTCCTACAGTCACCAAGGAACGAGCAAGAAGATCGATATCCCTAACGGCAGGGTTGGTGTGATTATTGGCAAAGGTGGAGAGACTATTAAGTATCTCCAGTTGCAGTCTGGTGCTAAAATTCAAGTTACTCGCGATATGGACGCCGACCCTAATTCTACTTCAAGAACGGTTGAGCTTATGGGCACTCCCGAGGCAATTGCTTCTGCGGAGAAACTCATAAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGCATTGTTGCTCGAAGACTGACTGGACAAGCTGGGTCAGATGAATTTGTCATGAGAATTCCAAATAATAAGGTTGGCCTTATAATTGGCAAAGGAGGAGAAACTATAAAGAATATGCAAGCTTCTACAGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCTCCAGGTGACACATCAACTGAAAGAACATTAAAAGTTGATGGGACACCTGAGCAAATTGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGTGGCGAGAATCGTCTTAGAAATCCTTCAATGTCTGGTGGGTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCCCCCCCTGCACCAATGCAGCAACCTGGTTATGGATATGTGCAACCTGGAGCATATTCTGGTCCATCACCTCAGTATAACATGCCTCAGCAACAATATTCGGGCTATCCTCCCCAACAACCAGGTGGATATTCCACCAATTGGGACCAGTCTTCTGCACCATCTCACCAACAGTCAACTCATGCTGGTGGCTATGATTACTATAGTCAACAGCCACAGCAACCACAAAATCCTGGAGGTCCTGCACCTCCAGCTGATGGCTCTGCATACAATTATAGTCAACCACCTTCTTCTGGTTATAGCCAACCCGGACAGGGTTATGCTCAGGACAGCTATAATGCATATAATGCACAATCTCAATCAGGGTATGGACAACCACCAACATATGATCAGCAGCAAGGCTATGGCTCCGTTACTGGCTATGGTAGTGGCAGTAACCCAGCACAAGAGGGCCACACTGCGAGCTATGCTTCACAGGGAGATTCAGCCCAAGCTCCATCTACCCAACAGCCACAGCAAGGTTATCCTACCAGCCAACAGCCCAGCTCAAACACTGCTAGCTACCCACCTCAGGGAACTCCTCAGTCAGGTTATGGGGTTCCACCTACATCCCAAGCTGCTTATGGAAGTCAACCACAGCCAGGTTACGGACCTGGTTATGGAGCCCCACAATCTCAAAAGCCAAGTGGTAATCCTCCTGTTTATGGACAGTCGCAGTCACCTAGTGCGGTAGGAGGCTATGGTCAGTCAGCATATCCTGCGCAGCCTCCACCTTCCGGTTATTCTCAACCCCAACCAGAATCTGGTGCTCAGAGAGCACCACCTTCGGGATATGGTGCAGGGCAACCAGGGTATGGTTCTCAAACATATGGTGCACCTCAGGGTGGTCAGCCTGCATATGGTCAGGCACCACCTCCATACAGCAACAGTTCTTATGGTGCTGGTTATACTCAGGCTCCAGCATATACTGCCGATGGTAATGCCAGTGGGAATACTCAACCTCCCCAAACAACCGCTGCCAAAACTTCGCCCCAGAGTTGA 1914 0.5084 MADEAHYSSPNDSTPLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVATRLLSVAPPPPLDAKRAKPDNGAPTSGFDSYDAKPQYSAVPPVSYSHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTSRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKVDGTPEQIESAKELVNQIISGENRLRNPSMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGAYSGPSPQYNMPQQQYSGYPPQQPGGYSTNWDQSSAPSHQQSTHAGGYDYYSQQPQQPQNPGGPAPPADGSAYNYSQPPSSGYSQPGQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSVTGYGSGSNPAQEGHTASYASQGDSAQAPSTQQPQQGYPTSQQPSSNTASYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSAYPAQPPPSGYSQPQPESGAQRAPPSGYGAGQPGYGSQTYGAPQGGQPAYGQAPPPYSNSSYGAGYTQAPAYTADGNASGNTQPPQTTAAKTSPQS* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0787 637 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Pvu9g0787 637 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Pvu9g0787 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 624 - -
Pvu9g0787 637 MobiDBLite consensus disorder prediction 381 502 - -
Pvu9g0787 637 Pfam KH domain 103 168 IPR004088 GO:0003723
Pvu9g0787 637 Pfam KH domain 195 260 IPR004088 GO:0003723
Pvu9g0787 637 MobiDBLite consensus disorder prediction 1 101 - -
Pvu9g0787 637 MobiDBLite consensus disorder prediction 515 537 - -
Pvu9g0787 637 CDD KH-I 193 259 - -
Pvu9g0787 637 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 50 624 - -
Pvu9g0787 637 MobiDBLite consensus disorder prediction 267 288 - -
Pvu9g0787 637 CDD KH-I 101 166 - -
Pvu9g0787 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 177 IPR036612 GO:0003723
Pvu9g0787 637 SMART kh_6 190 264 IPR004087 GO:0003676
Pvu9g0787 637 SMART kh_6 98 171 IPR004087 GO:0003676
Pvu9g0787 637 Gene3D K Homology domain, type 1 188 289 IPR036612 GO:0003723
Pvu9g0787 637 Gene3D K Homology domain, type 1 94 187 IPR036612 GO:0003723
Pvu9g0787 637 MobiDBLite consensus disorder prediction 311 366 - -
Pvu9g0787 637 MobiDBLite consensus disorder prediction 267 637 - -
Pvu9g0787 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 266 IPR036612 GO:0003723
Pvu9g0787 637 MobiDBLite consensus disorder prediction 594 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0787 Pvu-Chr9 12564123 12569447 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0787 K13210 - gmx:100797476 830.091