Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu9g0566 | ATGGAGGCCGGCGCAGGAAAAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTGAGGGGAATGGAATAGAGAAGGAAATTCCCTCTTGTTGTTTGAAGGCTAAAGCTTCATCCCCTGAGTCAGAGGCAAAGTGTCATTCCACTGTTGTTTCTGGGTGGTTTTCAGCTTCTCAAACTTGCTCAGGAAAATCTGTAAAACCAGATTATTTCAACAACCCGATGTGGCCAGGAGAAGCCCATTCAATTAAAGTTGAAGAGATATTGTACAGGGAAAAGTCAGATTACCAAGAGGTCTTGGTTTTTGAGTCATCAACTTACGGGAAAGTACTAGTACTTGATGGAATTGTTCAATTGACTGAGAAGGATGAATGTGCTTATCAGGAGATGATTGTTCATCTTCCCCTCTGTTCAATTCAGTCCCCCAAAACGGTTTTAGTTGTTGGTGGTGGAGATGGTGGAGTACTTAGGGAAGTATCCCGCCACAGTTCTGTAGAACATATTGATATCTGTGAGATAGATCAGATGGTCATTGACGTTTCCAGGAAGTTTTTTCCGGATTTAGCTGTTGGGTTTGAAGATTCTCGAGTACATCTACACGTTGGTGATGCTATTGAATTTCTTAAATGTGCTCCTGAAGGGAGGTATGATGCAATAATTGTTGATTCCTCCGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTTTTTGATACAATAGCAAAGGCATTAAGGCCTGGCGGAGTCCTTTGTAACATGGCAGAGAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACATTACGCATGGGCGAGTGTTCCGACATATCCAAGTGGTGTGATAGGCTTTCTTCTCTGTGCAACAAAAGGACCACCGGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCGATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCGGGTTTTGTGAAGAGAGAAGTGAGTCTGCTCCGAGATCCCTGA | 1080 | 0.4343 | MEAGAGKGLECPKTMDGKASEGNGIEKEIPSCCLKAKASSPESEAKCHSTVVSGWFSASQTCSGKSVKPDYFNNPMWPGEAHSIKVEEILYREKSDYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIVHLPLCSIQSPKTVLVVGGGDGGVLREVSRHSSVEHIDICEIDQMVIDVSRKFFPDLAVGFEDSRVHLHVGDAIEFLKCAPEGRYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVHYAWASVPTYPSGVIGFLLCATKGPPVDFVNPINPIEKLEGANEHKRELRFYNSEMHSAAFALPGFVKREVSLLRDP* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu9g0566 | 359 | Gene3D | Spermidine synthase, tetramerisation domain | 46 | 119 | IPR037163 | - | |
| Pvu9g0566 | 359 | ProSiteProfiles | Polyamine biosynthesis (PABS) domain profile. | 53 | 304 | IPR030374 | - | |
| Pvu9g0566 | 359 | Pfam | Spermidine synthase tetramerisation domain | 75 | 122 | IPR035246 | - | |
| Pvu9g0566 | 359 | PANTHER | SPERMINE SYNTHASE | 1 | 358 | - | - | |
| Pvu9g0566 | 359 | PIRSF | Spermidine_synth | 42 | 357 | IPR030668 | GO:0006595 | |
| Pvu9g0566 | 359 | Gene3D | Vaccinia Virus protein VP39 | 120 | 355 | IPR029063 | - | |
| Pvu9g0566 | 359 | TIGRFAM | speE: spermidine synthase | 79 | 348 | IPR001045 | GO:0003824 | |
| Pvu9g0566 | 359 | Hamap | Polyamine aminopropyltransferase [speE]. | 54 | 354 | IPR001045 | GO:0003824 | |
| Pvu9g0566 | 359 | Pfam | Spermine/spermidine synthase domain | 125 | 310 | - | - | |
| Pvu9g0566 | 359 | PANTHER | SPERMIDINE/SPERMINE SYNTHASE | 1 | 358 | IPR001045 | GO:0003824 | |
| Pvu9g0566 | 359 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Pvu9g0566 | 359 | ProSitePatterns | Polyamine biosynthesis (PABS) domain signature. | 146 | 159 | IPR030373 | - | |
| Pvu9g0566 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 72 | 352 | IPR029063 | - | |
| Pvu9g0566 | 359 | CDD | AdoMet_MTases | 167 | 253 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu9g0566 | Pvu-Chr9 | 10175183 | 10182071 | Dispersed/Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu9g0566 | K00797 | - | gmx:100815244 | 669.077 |
Event-related genes