Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0560 AATTTCAAAACATTTAAAGATGTGAAAGGTTGTGATGATGCTAAACAAGAACTTGAGGAAGTTGTGGAGTACCTGAAAAATCCGGCTAAATTTACTCGCCTTGGAGGAAAATTGCCTAAGGGGATTCTCTTAACAGGACCACCAGGAACTGGAAAAACACTTCTAGCCAAGGCTATTGCTGGAGAAGCTGGTGTTCCGTTTTTCTATCGTGCAGGATCAGAATTTGAAGAGATGTATGTTGGAGTTGGTGCTCGACGTGTAAGATCCTTATTTCAAGCAGCAAAAAAGAAGGCTCCTTGTATCATTTTCATTGATGAAATAGATGCTGTTGGTTCAACTAGGAAACAATGGGAGGGTCATACAAAGAAGACATTGCATCAGCTACTTGTTGAAATTGATGGCTTTGAGCAGAATGAAGGAATAATAGTAATTGCTGCAACAAACCTGCCTGATATTCTTGATCCCGCTTTAACAAGACCTGGTAGATTTGATCGACATATTATTGTACCAAATCCAGATTTACGTGGTCGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGACGATGTAGATACTAAATCAATTGCTCGTGGAACCCCGGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTTGAAGGTGCAGAGAAATTAGCAGCTTCACAGTTGGAGTTTGCCAAAGATAGAATAATTATGGGCACAGAACGGAAAACAATGTCCATATCCGAAGAGTCCAAAAAGCTTACTGCTTATCATGAGAGTGGCCATGCAATTGTTGCCATTAACACTGAGGGTGCTCAACCAATTCACAAGGCAACAATCATGCCTCGTGGATCTGCTTTAGGAATGGTTACTCAGCTTCCCTCTGGTGATGAGACATCAATCAGCAAGAAGCAGTTACTTGCTCGCCTTGATGTGTGTATGGGAGGAAGAGTTGCAGAAGAAATTATCTTTGGTCAGGATCAAATCACAACAGGGGCAAGTAGTGATCTTCACACAGCTACTGAGCTTGCCCAATATATGGTATCAAGTTGTGGGATGAGTGATGCAATAGGGCCAATTCATATAAAGGAGAGACCAAGTTCCGAAATGCAGTCACGTATTGATGCAGAGGTTGTGAAGCTTCTCAGGGAAGCATATGATCGAGTGAAAGCCCTTCTAAGGAAGCACGAGAAGGCATTGCATGCTCTGGCAAATGCATTATTAGAGTATGAGACACTTAGTGCAGAAGAAATCAGGCGGGTACTGCGACCATATCAGGACGGAAAAGTGGCAAAGAAACAGGAACAAGAGGCAGCAGAGGAGGAACTCGTGTTGGTCTAA 1359 0.426 NFKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMYVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEIDGFEQNEGIIVIAATNLPDILDPALTRPGRFDRHIIVPNPDLRGRQEILELYLQDKPLADDVDTKSIARGTPGFNGADLANLVNIAAIKAAVEGAEKLAASQLEFAKDRIIMGTERKTMSISEESKKLTAYHESGHAIVAINTEGAQPIHKATIMPRGSALGMVTQLPSGDETSISKKQLLARLDVCMGGRVAEEIIFGQDQITTGASSDLHTATELAQYMVSSCGMSDAIGPIHIKERPSSEMQSRIDAEVVKLLREAYDRVKALLRKHEKALHALANALLEYETLSAEEIRRVLRPYQDGKVAKKQEQEAAEEELVLV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0560 452 Gene3D - 172 245 - -
Pvu9g0560 452 Pfam Peptidase family M41 252 427 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0560 452 Coils Coil 385 419 - -
Pvu9g0560 452 Pfam ATPase family associated with various cellular activities (AAA) 42 170 IPR003959 GO:0005524|GO:0016887
Pvu9g0560 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 270 IPR027417 -
Pvu9g0560 452 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 3 434 - -
Pvu9g0560 452 ProSitePatterns AAA-protein family signature. 141 159 IPR003960 GO:0005524|GO:0016887
Pvu9g0560 452 Pfam AAA+ lid domain 193 227 IPR041569 -
Pvu9g0560 452 Gene3D - 1 171 IPR027417 -
Pvu9g0560 452 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 4 428 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g0560 452 SUPERFAMILY FtsH protease domain-like 253 431 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0560 452 CDD AAA 16 170 - -
Pvu9g0560 452 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 448 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g0560 452 PANTHER METALLOPROTEASE M41 FTSH 3 434 - -
Pvu9g0560 452 Coils Coil 435 452 - -
Pvu9g0560 452 Gene3D Peptidase M41 246 437 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0560 452 SMART AAA_5 38 173 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0560 Pvu-Chr9 10098591 10105392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0560 1 430 Miscellaneous Gene Families AT5G53170 88.837 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0560 K08955 - gmx:100814187 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0560 9 10098591 10105392 Pvu9g0560 9 10098591 10105392 ECH