Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0559 ATGGCATCCGTATCTAGTCAGCCACAGTTCCGTTACACTCAGCCACCGTCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAGGAACTGATTGAACTTGGGAAGCCGTTTGGAAAAGTTGTGAACACAAAATGCAATGTTGGGGCAAATAGAAATCAAGCTTTTATTGAATTTGCTGATTTAAATCAGGCCATTGCAATGATATCATACTATGCCTCATCATCAGAGCCTGCTCAAGTACGAGGAAAAACTGTATACCTACAATATTCTAACAGGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTCCTGGGAATGTATTGTTGGTAACGATTGAGGGTGCAGATGCACGTCTTGTCAGCATTGATGTCTTGCATTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACCTTTGAGAAGACAGCAGGATTTCAGGCACTGGTTCAATTCTCAGATGCCGAGACTGCCACCTCTGCGAAAGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTTCCTGAGCATATGGGACCATGTACCCTTAGGATCACATATTCTGGACATTCAGATTTAAGTGTGAAGTTTCAAAGTCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTGGAGGGAAGTGGACAGGCTATGGTTGGTTTGGATGGGAAAAGACTAGAGACTGAGAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGACCTGTCCAAAAAATTGCAATGTTCGATAAGAATGGTGGTTTGCAGGCTCTGATTCAATATCCAGATACCCAGACCGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACATTGCATTTATGATGGAGGTTTTTGCAAGCTTCACATTTCATATTCACGACATACTGATCTTAGTATAAAGGTTAATAATGATAGGAGCAGAGACTATACCATTCCTAATGCGCCTAACGCTCAACCTTCAATTTTAGGGCAACAATCTGTTCCTATGGTGGGCCCGCCTGGCCAACCGTACAATGGGTCTCAGACTGGATGGGGGACAGCGTCACTTCTCATTCTCTGCAGAACTTCCCTCCCATTCGCCTCAAACACTCAACACCACCATCCTCTTCTCTGCAAGTTCCCTCACTCTCTCACCTCCCTCTCTCCATGCAAACTCTCTCCGCCACAATTTCTCCCGCGCCTTCCCTTTTCCCGCTCTCGCAAAGTCGCTTCCCAACCCAATCCCTCCGCCGCCGATTCTAATTTTCTTTCAAATCAAACCACTCAGAATTCGACCAGTGTCATCGACGCCGAGGGATTCGATCCTTCAATCGGACCGGAAAAGAGCGCGATTGCGAAAGAGGATCAGAGGTCGTCGATTGCGGCGCTCTTCGAGGGAGCCAGAGAGAGCTCCAAAAAGGCTTTCGCCGACTTCATGAACTGGTTGCCGCTTTGGCAACAGGAACGGCGTCTGGCTAGGTTAATTATTGACGCGGAGGCGAATCCCAATGATGTCGCCAAACAAACCGCACTACTTGTTGAACTTAATAAGCACAGTCCCGAGTCTGTCATCAAGCACTTTGAAGGAAGGGAGGGTGCTGTAGACAGTAGAGGAGTTGTGGAGTATCTCCGAGCTTTAGTGGCCACTAATGCTATTGCTGAATATCTTCCAAATGAGGAATATGCGAAACCGTCCAGACTTCCTACCCTGTTGCAAGAGTTGAAACAGCGAGCATCTGGTAAATCAGACGAGCCTATTCTTAGCCCTGGAACATCCGAGAGGCAGCCATTACATGTTCTTGTGGTTGATCCCAAAGTATCACAAAAGTCACGCTTTGTACAAGATGTTTTATCAACTATTTTGTTTATTGTTGTTATGGGTCTGATCTGGGTTATGGGTATGGTTGCACTTCAAAAATTCATAGTAAGCTTGGGTGGGATTGGAACTTCAAGTGTTGGCTCAAGTACTACATATGCCCCAAAGGAACTAAATAAGGAAGTGATGCCAGAAAAG 2079 0.4541 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNAPNAQPSILGQQSVPMVGPPGQPYNGSQTGWGTASLLILCRTSLPFASNTQHHHPLLCKFPHSLTSLSPCKLSPPQFLPRLPFSRSRKVASQPNPSAADSNFLSNQTTQNSTSVIDAEGFDPSIGPEKSAIAKEDQRSSIAALFEGARESSKKAFADFMNWLPLWQQERRLARLIIDAEANPNDVAKQTALLVELNKHSPESVIKHFEGREGAVDSRGVVEYLRALVATNAIAEYLPNEEYAKPSRLPTLLQELKQRASGKSDEPILSPGTSERQPLHVLVVDPKVSQKSRFVQDVLSTILFIVVMGLIWVMGMVALQKFIVSLGGIGTSSVGSSTTYAPKELNKEVMPEK 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0559 693 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 393 - -
Pvu9g0559 693 MobiDBLite consensus disorder prediction 429 459 - -
Pvu9g0559 693 SMART rrm1_1 247 317 IPR000504 GO:0003723
Pvu9g0559 693 SMART rrm1_1 19 92 IPR000504 GO:0003723
Pvu9g0559 693 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Pvu9g0559 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Pvu9g0559 693 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Pvu9g0559 693 Pfam RRM-like domain 243 321 IPR021790 -
Pvu9g0559 693 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Pvu9g0559 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Pvu9g0559 693 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Pvu9g0559 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 - -
Pvu9g0559 693 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 1 393 - -
Pvu9g0559 693 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Pvu9g0559 693 SUPERFAMILY RNA-binding domain, RBD 249 344 IPR035979 GO:0003676
Pvu9g0559 693 MobiDBLite consensus disorder prediction 428 462 - -
Pvu9g0559 693 Gene3D - 242 347 IPR012677 -
Pvu9g0559 693 Gene3D - 112 221 IPR012677 -
Pvu9g0559 693 Gene3D - 5 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0559 Pvu-Chr9 10084848 10094101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0559 418 693 Miscellaneous Gene Families AT5G53170 49.671 2.67e-71 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0559 K14948 - gmx:100819659 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0559 9 10084848 10094101 Pvu9g0559 9 10084848 10094101 ECH