Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0544 ATGGGCTGCTGCTATTCAACTTCAAAGAGAACCGGAACACCAGGTTACGAGGAACCCACCGTTCTTGCATCTCAGACACCCTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAGTGAAGTAGAAGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTATTGAAGATGATCTTATTCACAGGGAAGAATTCCAGTTGGCACTATTCAGGAATAAAAACAAGAAAAATCTGTTTGCAGATAGGATTTTTGACTTGTTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGAGTTTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGCTGTATGATCTGAGGCAGACAGGGTTTATTGAAAGAGAAGAGTTGAAGGAGATGGTATTGGCACTTCTGCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTGGACAAGACTTTCAGTGATGCTGATATAAATGGTGATGGAAAGATCGATCAAGATGAGTGGAAAGCATTTGTGTCCAAACATCCATCCTTGATAAAGAATATGACTCTTCCTTATCTGAAGGATATTACATTGGCATTTCCCAGTTTTGTTGTAAGAACAGAAATTGAAGAGTCCGATATGTGA 672 0.3943 MGCCYSTSKRTGTPGYEEPTVLASQTPCEYHDPSLNVTVSEVEALHELYKKLSNSIIEDDLIHREEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAPLEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTEIEESDM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0544 223 PANTHER CALCINEURIN B 1 222 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pvu9g0544 223 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Pvu9g0544 223 Pfam EF-hand domain pair 59 104 IPR002048 GO:0005509
Pvu9g0544 223 Gene3D - 33 221 - -
Pvu9g0544 223 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 222 - -
Pvu9g0544 223 SMART efh_1 118 146 IPR002048 GO:0005509
Pvu9g0544 223 SMART efh_1 81 109 IPR002048 GO:0005509
Pvu9g0544 223 SMART efh_1 162 190 IPR002048 GO:0005509
Pvu9g0544 223 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Pvu9g0544 223 SUPERFAMILY EF-hand 35 211 IPR011992 -
Pvu9g0544 223 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Pvu9g0544 223 CDD EFh 118 188 IPR002048 GO:0005509
Pvu9g0544 223 Pfam EF-hand domain pair 117 186 IPR002048 GO:0005509
Pvu9g0544 223 PRINTS Recoverin family signature 85 106 - -
Pvu9g0544 223 PRINTS Recoverin family signature 132 150 - -
Pvu9g0544 223 PRINTS Recoverin family signature 178 198 - -
Pvu9g0544 223 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0544 Pvu-Chr9 9855546 9859550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0544 37 223 EF-hand Containing Proteins AT5G24270 75.936 4.23e-101 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0544 K06268 - gmx:100811649 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0544 9 9855546 9859550 Pvu9g0544 9 9855546 9859550 ECH