Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0538 ATGGACTCTCTACAACTCCATGCTCTTCTACATCCGCATCTATGCGCATCATCATCATCACCATCACTAAGGCAGCTGCGTTTCCCTCTTCCGTTAATACGAAATTCAAGAAATCGCAACTTCCGATTGTTTTCTGCTCACAATGGCGGCGCTGCTTCGCAAGACGGTCCCTTCGCTTTTGAAGAAAAAGTTGTCTCTTCCCCCAAAGATGATAGAGGTCTCGTGCTGGCCAGAGAAACCGACGATTTTGGTTATCTCGTTGGCTTTCGCTTGATTCCGGAGTCAGGTCTTGAAGAGTTGATGAGTGTGCAACATGCAATAGCTGAGGAAGACTCTAGTAGCGACTTGGCTAAAAAACCTGGGATTAAGGATACAGGTGAAGAGGAAGCCGAGACTAGAGTGTCCCACAACATTATTTTTGTGACTGCTGAAGCTGCGCCATATTCCAAGACTGGTGGTCTTGCTGATGTTTGTGGCTCTTTGCCAATTGCTCTGGCGGCTCGCGGGCACCGTGTGATGGTTGTCACGCCCAGATACATTCATGGTACTTCTCAGGATGCTAAGTTTGCTGGGGCAGTTGATCTGGAGCAACGCACCAAAGTGTCGTGCTTTGGAGGTGCTCAAGAAGTTGGCTTTTTCCATGAGTATAGGGAAGGGGTTGATTGGGTATTTGTGGACCACCCCTCGTTCCATAGACCAGGGAATCCGTATGGGGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCGTGTGAAGCGCCATTGGTGCTTCCATTGGGGGGTTTCACTTACGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTGGCAGCGAAGTATCGTCCACATGGGGTATATAGGGATGCTCGCAGTATATTAGTGATACATAATATAGCACATCAGGGAGTGGAACCTGCAATTACATACAGTAGTTTGGGGCTGCCTACAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTACGTGGGCAAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTTGTTACAGCTGACCGGATTGTGACAGTAAGCAAGGGCTATTCCTGGGAGATAACTACAAGTGAAGGTGGAAATGGTCTACATGAACTATTAAATGGTCGAAAAAGTATTCTCAGTGGGATCACAAATGGAATTGACGTCACTGAATGGGACCCATCATGTGATAAACATATTGCTTTCAACTACTCTGCTGATGACCTTTCCGGGAAGGCCAAATGCAAGTATGCTTTGCAGAAGGAATTGGGTCTTCCAGTGAGGTCTGATTGTCCATTGATTGGGTTCATTGGAAGACTGGACTACCAGAAAGGTATTGACTTGATCCGCTTGGCAATGCCAGAGCTCATGGAAGCGGATGTTCAGTTTGTAATGCTTGGGTCAGGAAACCCTATTTATGAAGACTGGATGAGAGCAACAGAGTCCGTTTATAGAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCAATATCTCATAAAATAACTGCAGGCTGTGATATATTGTTGATGCCATCTGCGTTTGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTAGTTCATGAAACTGGGGGCCTAAGAGATACTGTTCATAATTTTAGTCCATATACTGAAGACAGCAAAGCTGAAAGCACTGGGTGGACGTTTTCTCCACTAACAAAAGAGAGCATGTTAACGGCTCTAAGATATGCCATTCAGACATACAATGAACACAAGTCTTCGTGGGAGGGATTGATGCTAAGAGGCATGACAAAAGATTACACATGGGTAAATGCAGCTACTCAATACGAGCAAATCATTGAGTGGGCATTCATCGACCCACCCTATTGCTGA 1938 0.4577 MDSLQLHALLHPHLCASSSSPSLRQLRFPLPLIRNSRNRNFRLFSAHNGGAASQDGPFAFEEKVVSSPKDDRGLVLARETDDFGYLVGFRLIPESGLEELMSVQHAIAEEDSSSDLAKKPGIKDTGEEEAETRVSHNIIFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVVTPRYIHGTSQDAKFAGAVDLEQRTKVSCFGGAQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPVLLAAKYRPHGVYRDARSILVIHNIAHQGVEPAITYSSLGLPTEWYGALEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGNGLHELLNGRKSILSGITNGIDVTEWDPSCDKHIAFNYSADDLSGKAKCKYALQKELGLPVRSDCPLIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESVYRDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFSPYTEDSKAESTGWTFSPLTKESMLTALRYAIQTYNEHKSSWEGLMLRGMTKDYTWVNAATQYEQIIEWAFIDPPYC* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0538 645 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 58 645 - -
Pvu9g0538 645 Gene3D Glycogen Phosphorylase B; 156 634 - -
Pvu9g0538 645 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 58 645 - -
Pvu9g0538 645 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 134 637 - -
Pvu9g0538 645 Hamap Glycogen synthase [glgA]. 136 638 IPR011835 GO:0004373
Pvu9g0538 645 Pfam Glycosyl transferases group 1 451 603 IPR001296 GO:0016757
Pvu9g0538 645 Pfam Starch synthase catalytic domain 137 395 IPR013534 -
Pvu9g0538 645 CDD GT5_Glycogen_synthase_DULL1-like 137 637 - -
Pvu9g0538 645 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 137 635 IPR011835 GO:0004373
Pvu9g0538 645 Gene3D Glycogen Phosphorylase B; 410 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0538 Pvu-Chr9 9776722 9787352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0538 137 635 Glycosyltransferase AT3G01180 51.976 1.05e-168 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0538 K00703 - gmx:100807354 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0538 9 9776722 9787352 Pvu9g0538 9 9776722 9787352 ECH