Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0398 ATGGACTCCGTTCCCTTTCGCGATGGCAACATACACGCGATTCTTGACTCACGATATCTTCACTCTCCACTGGATGTTAATCACACTTTGCAGACTCATTCCTCTCTCGTTCGGAGGCTTTCTCAAGAAAGAGAGTTAGAGGGCCACCTTGGATGTGTCAATGCGGTGGCTTGGAATTCGAATGGTTCATTGTTGATATCCGGATCCGATGATACTCGGATCAATATTTGGAGCTATTCTGGACGAAAACTTCTACATTCAATTGAGACAGGACATACTGCAAATATATTTTGTACCAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAACTTGTCTCGCTTAAGTGGAAGTGGATCTAGCGACAATTCAATCATTGCTCCATCTGCACTTTATCAGTGCCATGCTCGAAGAGTCAAGAAATTGGCTGTTGAAGAAGGCAATCCTAATATAGTATGGAGTGCTAGTGAAGATGGGACCCTTAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGGTCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGATCTAAAAGATCACTTGCCGATCCTCCTAAACAAGTCCTTTCTTTAAAGTCTTTTGATATTAGTTCAACTAGGCCATATTTGGTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGTTGCCACCTCTTAGCTCCTGTCGAAAAATAATGTCTCCTCCTCCTTGCGTTAATTATTTTTGTCCAATGCATCTTTCTGATCGT 828 0.4287 MDSVPFRDGNIHAILDSRYLHSPLDVNHTLQTHSSLVRRLSQERELEGHLGCVNAVAWNSNGSLLISGSDDTRINIWSYSGRKLLHSIETGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLSGSGSSDNSIIAPSALYQCHARRVKKLAVEEGNPNIVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLSLKSFDISSTRPYLVLVGGSDAFARLYDRRMLPPLSSCRKIMSPPPCVNYFCPMHLSDR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0398 276 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 22 275 - -
Pvu9g0398 276 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Pvu9g0398 276 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Pvu9g0398 276 SUPERFAMILY WD40 repeat-like 38 256 IPR036322 GO:0005515
Pvu9g0398 276 Gene3D - 133 266 IPR015943 GO:0005515
Pvu9g0398 276 SMART WD40_4 81 123 IPR001680 GO:0005515
Pvu9g0398 276 SMART WD40_4 39 78 IPR001680 GO:0005515
Pvu9g0398 276 SMART WD40_4 137 177 IPR001680 GO:0005515
Pvu9g0398 276 SMART WD40_4 212 245 IPR001680 GO:0005515
Pvu9g0398 276 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 22 275 IPR045151 -
Pvu9g0398 276 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Pvu9g0398 276 Gene3D - 25 132 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0398 Pvu-Chr9 7851176 7854268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0398 47 138 Miscellaneous Gene Families AT5G08390 28.723 8.26e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0398 K11807 - pvu:PHAVU_009G0381000 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0398 9 7851176 7854268 Pvu9g0398 9 7851176 7854268 ECH