Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0357 ATGGCGAACCGCTCCCTCTCCGCCGGAATCAGACGTTTTGTGTTCGGCGCGAAAACTCTTTGCAGCACCGTTACTTCTCGCGCTTCGGCGTTGCACGTGCCGTTCTTGCGCAAGCTCAAATCCCCGAAGCAGAATCCATTGTTGGTGCTTCAAAATTGGGTGGACGAAGGCAACGATGTTTCACCCTCCCAGCTCAGAAGCATTGCCAGAACCCTCGTCAGATCGAAACGCTACCACCACGCCCTCGAGTTATTTAAGTGGATAGAAAACCAGAAAAATTTCCATATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTATGGTTTAATGGAAGCTGAAGAATATTTTATGAATTTACGTGACTCGGCTGCAAAGAAGGCTACCTGTCTCACCCTTCTACGTGGCTATGTAAGATATAGGGACACTTGTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAAAGTACCCTGCAATGTGCTCTCCTACAATCTTTGGATGAATGCTTATAGTGAGGAAGAAGGATATGGGACTGCAGCAGTAGAGACAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGTTTATAAGAAAGCAGGACAACCTAAGAAAGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTATCTACCTGTAATCGTCTCGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTCTTACGGTTATGGGAAGCTAGTAAGGCAGTTGGTGAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATTCTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGAATGGATTAATGGAAGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTTAATAGGCAAAAAATAGATGAGGCTATTATTGCAATGAAAAGAGCTTTGGCTATGATGAAAAATTGTCATTGGAGGCCACCACATGGACTTGTGTTAGCCATTGCAGAGTTTTTGGAGAAAGATGGGAATCTTGAATATGCCAACAATTATATTACAGATATCCATAATTTTGGTCTTGCTAATTTATCATTGTATAAAATATTACTAAGAATGCACCTTTATGCCAACAAACCACATTTCCATATCCTTAAAATGATGGATGAAGATAAGGTTGAGATGGATGATGAGGCACATTCCATTGTTAAAGCTTTCACTGCTGAAAAGTTCAGAGGTGAAGCAGTAACCTGGAAGTCAATTTCATTCTTGGATGCTGAAAGATTTTGTGGGATTTGA 1563 0.4095 MANRSLSAGIRRFVFGAKTLCSTVTSRASALHVPFLRKLKSPKQNPLLVLQNWVDEGNDVSPSQLRSIARTLVRSKRYHHALELFKWIENQKNFHMIPVDHAMKLELIIENYGLMEAEEYFMNLRDSAAKKATCLTLLRGYVRYRDTCKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNAYSEEEGYGTAAVETVFRQMQNDKNVEVGWSSLATLANVYKKAGQPKKAILVLKDAEKKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKAVGERISCANYICILTCLVKLGDILQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVNRQKIDEAIIAMKRALAMMKNCHWRPPHGLVLAIAEFLEKDGNLEYANNYITDIHNFGLANLSLYKILLRMHLYANKPHFHILKMMDEDKVEMDDEAHSIVKAFTAEKFRGEAVTWKSISFLDAERFCGI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0357 520 Pfam PPR repeat 348 367 IPR002885 -
Pvu9g0357 520 PANTHER OS12G0527900 PROTEIN 29 495 - -
Pvu9g0357 520 Gene3D Tetratricopeptide repeat domain 241 433 IPR011990 GO:0005515
Pvu9g0357 520 Gene3D Tetratricopeptide repeat domain 32 223 IPR011990 GO:0005515
Pvu9g0357 520 PANTHER OS02G0796400 PROTEIN 29 495 - -
Pvu9g0357 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0357 Pvu-Chr9 7394860 7399621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0357 39 429 EF-hand Containing Proteins AT1G02150 32.061 2.14e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0357 - - gmx:100813805 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0357 9 7394860 7399621 Pvu9g0357 9 7394860 7399621 ECH