Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0344 ATGCTCCTCCAGCCATTACTTTGCGGTTCAAAAGTCGCATCTCAATCCACACTTTTCGCTTCGGTGTTTTCAGCCGAAAACAACGCCGGCCGCTGTTCGTTTACCGGAAATTCGTCCGTCCGTGACGTGAGGCCGGTGAGGCTTATGAAGCAAGCATCGGGAAGCATAACGAACAATGAACGTGGAGTTTTTAGTGAGATAATGGATCGTCACAAGCTTAAGACACCCGATGCTTATGGCCGTCGTGCTCAAGAAGGGGTTCTTCAGGAAGAATCCTCCAAAGTGATGGAGAGCAGACCATCAGGGAAAATTTTCCCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGTTGACAGTGGCATCAATTTTTCTATATTTTCACAACATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGGGGAAGTATAGACACCATGAATGGTGACATGATAGAAGTGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCTCGAAGCAATGTTCTATACGGATATCGCATAGATGGACCTCAAGACTGGGGCAAGGGGCATCGATTTGACAACAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGTCGAAGATATTTTGGGGATATTAGCACAAAGTTGTCTAGGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGATTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACGTTTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGGAGCTATCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAATTGCTGCCTGTCTTCGAGTTTGATGAGTTGGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCTACAATAAATTTCTTTTCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCTCGAGAGTTCAAAGAAATGGTTAAAGCCTTACATTCTTCTGGTATAGAGGTTATTTTGGATGTGGTCTATAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACCTCGTTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTAAACTGTAACCATGCTGTGGTTACGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCACGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGTGGAATTGATGGCTCCCCCCTTAATGCCCCCCCAATTATTAGGGCAATTGCTAAAGATGCAGTCTTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTTTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTATGGTGTGAAGGGGAGCTTTGCTACTCGTGTTTCTGGGTCTTCTGATCTTTACAAAATGAACAAGCGAAGGCCATATCATAGTATTAACTTCGTTATTGCACATGATGGATTCACCTTGCGTGATCTTGTTTCATACAATTTGAAGCACAATGAAGCGAATGGGGAAGGTGGAAATGATGGTACCAATGATAATTTTAGTTGGAATTGTGGTTTTGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCAAGGCAAATGAAAAACTTTCACTTGGCACTAATGATATCTCAGGGTACACCAATGATGCTAATGGGAGATGAATATGGTCATACTCGCAATGGAAATAACAATAGTTATGGACATGATACCACCATAAATAATTTTTTGTGGGATCAGTTGGATGCCCAGAAGAGTGATCACTTCAGGTTTTTCTCGAAGGTGATAAAGTACAGGCATGCACATGAAGTATTCAGTCATGAAAGTTTTCTCGGCAAGAATGACATAACATGGCATGAAGACAATTGGGATAACCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAGGAGTGGGGCAGATATCTATTTGGCATTTAATGCTCACGAATACTTTGTCAAAGTTCTGCTGCCCACACCTCCAGAAATGAGGAAGTGGTTCCGTGTGGGGGACACTAATCTCAAATCACCGGAGGACTTTGTTCTAGATGGTGTTCATAGCATAGGAAACACGTATAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTATTGA 2352 0.4196 MLLQPLLCGSKVASQSTLFASVFSAENNAGRCSFTGNSSVRDVRPVRLMKQASGSITNNERGVFSEIMDRHKLKTPDAYGRRAQEGVLQEESSKVMESRPSGKIFPGQAFPLGVSEVDSGINFSIFSQHATAVTLCLVLPERGSIDTMNGDMIEVVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDNSIVLVDPYAKLVEGRRYFGDISTKLSRFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTFDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKEMVKALHSSGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHAVVTELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPIIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRVSGSSDLYKMNKRRPYHSINFVIAHDGFTLRDLVSYNLKHNEANGEGGNDGTNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTTINNFLWDQLDAQKSDHFRFFSKVIKYRHAHEVFSHESFLGKNDITWHEDNWDNHDSKFLAFTLHDRSGADIYLAFNAHEYFVKVLLPTPPEMRKWFRVGDTNLKSPEDFVLDGVHSIGNTYNIAPYSSILLEAKY* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0344 783 SMART aamy 259 666 IPR006047 GO:0005975
Pvu9g0344 783 CDD AmyAc_Glg_debranch 239 678 - -
Pvu9g0344 783 CDD E_set_GDE_Isoamylase_N 110 259 IPR044505 -
Pvu9g0344 783 Gene3D Glycosidases 235 689 - -
Pvu9g0344 783 SUPERFAMILY Glycosyl hydrolase domain 688 782 - -
Pvu9g0344 783 SUPERFAMILY E set domains 106 243 IPR014756 -
Pvu9g0344 783 PANTHER GLYCOGEN DEBRANCHING ENZYME 85 781 - -
Pvu9g0344 783 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Pvu9g0344 783 Gene3D Immunoglobulins 91 228 IPR013783 -
Pvu9g0344 783 Gene3D - 690 783 IPR013780 -
Pvu9g0344 783 Pfam Alpha amylase, catalytic domain 280 396 IPR006047 GO:0005975
Pvu9g0344 783 SUPERFAMILY (Trans)glycosidases 238 682 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0344 Pvu-Chr9 7239360 7256403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0344 6 782 Glycoside Hydrolase AT4G09020 71.410 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0344 K01214 - gmx:100806342 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0344 9 7239360 7256403 Pvu9g0344 9 7239360 7256403 ECH