Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0295 ATGGCTGCTCTGCGTGCCATGCTTCGTCACATTAACATGTGCGCCACCTTTGCTTCACCGCCGCGCCCAACTATGGCGTTGCTTTTGAGTTGTGGAGTCACGTGGCACCATCTTATTCCCTCCAAAACCTCCAGAGCCGTTAAATCCCACGCAGGTTCAGACAGTTACAAGTTAGTGGTGAAGAAAGACGAGCGGTTGGGAGCGGGAGAGTGTGTAGACGAGGTTGTTGGGAATGGGACCACAATTGCGGCCATCGTAACTTCCTTGGGGGGGCCACCTGCCGCCGTTGGAATCGTTCGGCTTTCAGGCCCTGGAGCAGTGTCTATTGCGGGCCGGGTGTTCCGGCCCGCCCGGAACTCGTGGCGGCCCACCAGCCACGTCGTGGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTGATCGATGAGGTCTTGGCGGTGCCGATGCTGGCTCCGAGGTCGTACACGCGCGAAGATGTGGTGGAGCTTCAGTGTCACGGGAGCGAAGTATGTCTGCGCCGAGTGCTAAGGACTTGTTTGGAAGCCGGGGCAACGCTTGCTCAACCAGGCGAGTTCACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCACAAGCCGAAAATGTTGCAAGATTAATTGCTGCCAAATCTGTGGCTGCTGCAGATGCTGCACTACAAGGAATTCAGGGTGGCTTTTCTTCACTTGTTCGATCTTTGAGGAGTCAGTGCATTGAGTTGCTTACTGAGATTGAAGCACGTTTAGACTTCGATGATGAGATGCCGCCTCTGGATTTGAATCTGATTATGGATAAAATCCATGACATGTCACGAGACGTTGAGAATGCATTGGAGACAGCAAACTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATAGTTGGCCGCCCGAATGTTGGCAAGTCAAGTCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCGAGTATCAGTGTCAGTGGTATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACTGATAACATTGTGGAAAAGATAGGCGTAGAGCGATCTGAAGCAGTTGCTAAGGGGGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTCGAAAGGATTCAATCTACCAAGGGATCAACTGTCTCATCCACCCCAGTAATCCTTGTAGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATTTGAGAGTCATAAAATTTTCAGCGAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTACAAGACTTAGAGAGGGCGGTATTACAGATTGTGGGTCTTGAAAGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGGTAAGCTATCATTTTGGCTTTCCATCTTTCTCGCAAAGTCGTGGCTTCAAAATTTTCTTAAACTTTTAA 1512 0.4927 MAALRAMLRHINMCATFASPPRPTMALLLSCGVTWHHLIPSKTSRAVKSHAGSDSYKLVVKKDERLGAGECVDEVVGNGTTIAAIVTSLGGPPAAVGIVRLSGPGAVSIAGRVFRPARNSWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALQGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHDMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDNIVEKIGVERSEAVAKGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTVSSTPVILVVNKIDCKPCAETEWDKGFESHKIFSEHVFTCAVTGQGLQDLERAVLQIVGLESIPAGGRRWTVNQVSYHFGFPSFSQSRGFKIFLNF* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0295 503 Pfam GTP-binding protein TrmE N-terminus 81 201 IPR018948 -
Pvu9g0295 503 TIGRFAM small_GTP: small GTP-binding protein domain 297 434 IPR005225 GO:0005525
Pvu9g0295 503 Pfam MnmE helical domain 204 465 IPR025867 -
Pvu9g0295 503 PRINTS Transforming protein P21 ras signature 297 318 - -
Pvu9g0295 503 PRINTS Transforming protein P21 ras signature 337 359 - -
Pvu9g0295 503 PRINTS Transforming protein P21 ras signature 409 422 - -
Pvu9g0295 503 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 79 483 - -
Pvu9g0295 503 CDD trmE 294 466 IPR031168 -
Pvu9g0295 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 461 IPR027417 -
Pvu9g0295 503 Pfam 50S ribosome-binding GTPase 298 419 IPR006073 GO:0005525
Pvu9g0295 503 Gene3D Probable tRNA modification gtpase trme; domain 1 71 201 IPR027266 GO:0005515
Pvu9g0295 503 Hamap tRNA modification GTPase MnmE [mnmE]. 80 496 IPR004520 GO:0003924|GO:0005525|GO:0006400
Pvu9g0295 503 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 296 466 IPR031168 -
Pvu9g0295 503 Gene3D - 297 468 IPR027417 -
Pvu9g0295 503 PANTHER TRNA MODIFICATION GTPASE GTPBP3 79 483 - -
Pvu9g0295 503 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 94 427 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0295 Pvu-Chr9 6351475 6354816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0295 K03650 - gmx:100779193 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0295 9 6351475 6354816 Pvu9g0295 9 6351475 6354816 ECH