Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0267 ATGGAAAACGCCGATGTATTCTTGGGCTTACAGGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCTGAGTTCGTTAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCTGATCCCGAGAGGGACAGTGCCTTGGTTCAAGCGTTCCTTGCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTTTGGGCTGGTTGCTCTGAGGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTATTTGCTCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGGTTCAACAATTTGTTCGACCTGAAAATTTGGATATCAAGCCACCATTTCAGAATGAATCATCGTGGTTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCACCCAGGGACAAACTTGTGTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGCTTGCTTCCAAAGAGAATCCTCCGGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCCTAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAGTCTCGATTGGTTGCAGAAGCAGCATATTATTTTACCAACATGCTCTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAGCATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACGCAAGATCCCGGTTCACCATATCAAAATAATGGACAGCATCCAATAGCAGAACCCACTAGGCACAAAAATAAAGCTTTGAATGATAATAGGGACCCTGCACTACAAACTCCGTCCTCTGTGGCAAGATCAGAAAGCAAGAAAGTTGCTTTTGCAGATGAATTACTGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTGAAGGAGGACAAGTTGAATGATGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGAGATCTAACAGTAAGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCTAAAGGGTTAGGCGTCTCTCCAACATCCCAGCCGCCAGCCGCCCAAAATAATTCTGAAGACCGTGTTGAAACAACAATAGATTCTTCAGACGGTGTTCATCTAGATGAGAATAATAAATCAGAAGAAGCTATTGATACAACAGAGGATAGTTCAGATAAAGTTTCTCCTATCGAGGAGAAAATAATTGAGTCTGGTCTGCCACAGGATGAGCCAGCTGCTCCTGAGGAGGGTGATGCCCCGCTAAAGTAA 1416 0.4301 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPERDSALVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALVQQFVRPENLDIKPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFESSMEFARAMLSGISVDTQDPGSPYQNNGQHPIAEPTRHKNKALNDNRDPALQTPSSVARSESKKVAFADELLITKVPSLSDLENKGASMILKEDKLNDVFGEFPYLFASVGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTSQPPAAQNNSEDRVETTIDSSDGVHLDENNKSEEAIDTTEDSSDKVSPIEEKIIESGLPQDEPAAPEEGDAPLK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0267 471 MobiDBLite consensus disorder prediction 393 411 - -
Pvu9g0267 471 SUPERFAMILY VPS9 domain 11 256 IPR037191 -
Pvu9g0267 471 MobiDBLite consensus disorder prediction 412 454 - -
Pvu9g0267 471 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Pvu9g0267 471 Gene3D VPS9 domain 99 265 IPR037191 -
Pvu9g0267 471 MobiDBLite consensus disorder prediction 269 309 - -
Pvu9g0267 471 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Pvu9g0267 471 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 409 IPR045046 GO:0005085|GO:0016192
Pvu9g0267 471 MobiDBLite consensus disorder prediction 393 471 - -
Pvu9g0267 471 MobiDBLite consensus disorder prediction 269 286 - -
Pvu9g0267 471 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Pvu9g0267 471 PANTHER BNAC09G47180D PROTEIN 1 409 - -
Pvu9g0267 471 Gene3D - 17 97 - -
Pvu9g0267 471 SMART vps9_2 135 254 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0267 Pvu-Chr9 5971901 5978354 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0267 K20131 - gmx:100810958 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0267 9 5971901 5978354 Pvu9g0267 9 5971901 5978354 ECH