Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0228 ATGGCCAGTGATTTTTCTGTCATCTCCAATGGAGACAGCAATGGCAATGTAAATCCACAACCTAATCAGCAAAGGACGTACCAAGTGGTAGTGGCTGCCACCCAAGATTGGGGCATTGGTAAGGATGGGAAGTTACCCTGGAGGTTGCCTACTGATCTCAAATTTTTTAAGGAGATCACTGAGAAAACATCTGATCCTGGAAAGAAGAATGCCATCGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTCAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACGGCAGAGAATGTTGTTATATGTGGAAGTATGTATTCTGCATTGGAGCTACTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATTGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCACGTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAACATTGAGTGCGACACTTTTATGCCTTCAGTTGATTTCACTATATTTCGGCCATGGTACTCATCCTTTCCCAAAGTGGAGAACAACATACGCTATTCTTTCATCACTTATGTGCGTGTAAGGAGTTCTGCTGTGGAGTCCCTGAGTCAGAATATTGATCCACTTATTGATAATAATTCTGATTCCATAAAATTTGAGGTCAAGGATTTTTCTTTTCTTCCCAAAATGATTTTTGAGAGACATGAGGAGAATATGTATCTTAAGCTGGTTCAAGACATCATTACCGAAGGTACAATAAAGGGTGATAGGACAGGGACCGGTACCTTCTCAAAATTTGGTAGCCAGATGAGATTCAATTTGCGCAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGCTACAGGAAAAAAACATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGAGCCACATACACTGATATGCATGTTGACTACTCCGGCCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGAATAATCCTGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGCTGATCTTAAATTAATGGCACTTCCACCTTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATGTTTGTGATCTAATTCCTGGTGATTTTATCCATGCTATTGGGGATACACATGTTTACAGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCTTCCAAAACCTTTTCCAACATTGAAGATAAATCCAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGAAATGAAGATGGCTGTCTAA 1590 0.4176 MASDFSVISNGDSNGNVNPQPNQQRTYQVVVAATQDWGIGKDGKLPWRLPTDLKFFKEITEKTSDPGKKNAIVMGRKTWESIPLQYRPLSGRLNVVLTRSGSFDIATAENVVICGSMYSALELLAASPYSLSIEKVFVIGGGQIFREALNARGCEAIHLTEIQSNIECDTFMPSVDFTIFRPWYSSFPKVENNIRYSFITYVRVRSSAVESLSQNIDPLIDNNSDSIKFEVKDFSFLPKMIFERHEENMYLKLVQDIITEGTIKGDRTGTGTFSKFGSQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKNIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGATYTDMHVDYSGQGFDQLLDVINKIKNNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHAIGDTHVYSNHVRPLQEQLHNLPKPFPTLKINPKKDIDSFVAADFKLIGYDPHQKIEMKMAV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0228 529 CDD DHFR 30 202 IPR001796 GO:0004146|GO:0046654
Pvu9g0228 529 PIRSF DHFR-TS 8 529 IPR012262 GO:0004146|GO:0004799|GO:0006730
Pvu9g0228 529 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 38 60 IPR017925 GO:0004146
Pvu9g0228 529 Gene3D Dihydrofolate Reductase, subunit A 11 205 IPR024072 -
Pvu9g0228 529 Pfam Dihydrofolate reductase 28 203 IPR001796 GO:0004146|GO:0046654
Pvu9g0228 529 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Pvu9g0228 529 TIGRFAM thym_sym: thymidylate synthase 249 529 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 SUPERFAMILY Dihydrofolate reductase-like 21 203 IPR024072 -
Pvu9g0228 529 MobiDBLite consensus disorder prediction 1 23 - -
Pvu9g0228 529 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 229 529 IPR036926 -
Pvu9g0228 529 PANTHER THYMIDYLATE SYNTHASE 1 1 529 IPR045097 GO:0016741
Pvu9g0228 529 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 236 529 IPR036926 -
Pvu9g0228 529 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Pvu9g0228 529 Pfam Thymidylate synthase 249 529 IPR023451 -
Pvu9g0228 529 Hamap Thymidylate synthase [thyA]. 247 529 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Pvu9g0228 529 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 529 - -
Pvu9g0228 529 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0228 Pvu-Chr9 5148273 5153782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0228 K13998 - gmx:547833 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0228 9 5148273 5153782 Pvu9g0228 9 5148273 5153782 ECH