Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0211 ATGCCTACACTTGTTTCTGAGGCATTTCAAGCCCGTAGCGCAGAACCCTTGAGCTTGAAGCGTATTTTCAGTGCCTCAGGCATTAAGGGCAAACGAATCACTGTATTGTCACCAAAACAAAATGCTCTCACTGATTTCATTCAAACACTCATTGCGGAAAACCCAGACATTGACTCCCCTTTCGGAGTCCTGGATTTGGGGATCGTTATGGGCTTGATGGACAAATGGGCCACCAAGCTCCCCACGGTTCAACCTTTCTACGCCGTCAAGTGCAACCCCAACCTCTCCCTCATCGGCGCTCTCGCCGTCCTCGGCGCCAGCTTCGACTGCGCCAGCAAAGCCGAGATAGAAGCCGTCTTATCCCTCGGAGTCTCACCTGACCGTATCATCTACGCCAACCCTTGCAAATCCGCATCCCACATCAGATACGCCGCCACCGTAGGCGTCAACGTCACAACCTACGACTCTAAAGACGAGGTAGAAAAGATACGCAAATGCCACCCCACGTGCGAGTTGCTCCTCCGAATCAAGCCGCCGCAGGAAAGTGGAGCGCGCAGGTTGGGCGTCAAATTCGGCGCGCTTCCTGAAGAAGTTCCGGAGCTTCTGAGCGTGGCTCACGCCGCGGGACTCAAAGTGACCGGCGTGTCCTTCCACATTGGAAGTGGTGGAGAAAACGCGCAAGCTTATCAAGGAGCCATATCTGCGGCTAAGTCCGTCTTCGATGCGGCTTCCCGGCTGGGCATGCCGAGAATGCGCGTTCTCGACATCGGCGGCGGCTTCACCTCTGGGCCGATGTTCGACGCCGCAGCTATGAAAATCAACGCCGCGATTCAAGACAGCTTCGGGAATGAAGAGGAGCTGGTGGTTATCGGCGAGCCGGGTCGTTACATTGCGGAAACGGCTTTCACGTTGGCCACAAAGGTTGTCGGGAAACGCGTGAGAGGAGAGTTGAGGGAGTATTGGATTGACGATGGAATTTATGGAACGTTTAATCACATGTATTTTGACGACGCTACATTTACGTGCATGCCACTCGCTTGCACCTCGAAACCTGAGGATCCTTCTTGCAGGGATTTCAAAACCTACTCTTCTACCGTTTTTGGACCAACTTGCGATTCACTTGACACTGTTCTGACGGATTACCAGCTTCCGGAACTGCAAGCGAACGATTTCCTTGTGTTCCCGAATATGGGTGCTTACACTACTTCCTCAAGCTCTAACTTCAATGGCTTTAGCTCCTCAGTGAATTCCACATTCCTTGCATATTCCCAACCCTATCGCGCTAGCATGTTCTAG 1296 0.5285 MPTLVSEAFQARSAEPLSLKRIFSASGIKGKRITVLSPKQNALTDFIQTLIAENPDIDSPFGVLDLGIVMGLMDKWATKLPTVQPFYAVKCNPNLSLIGALAVLGASFDCASKAEIEAVLSLGVSPDRIIYANPCKSASHIRYAATVGVNVTTYDSKDEVEKIRKCHPTCELLLRIKPPQESGARRLGVKFGALPEEVPELLSVAHAAGLKVTGVSFHIGSGGENAQAYQGAISAAKSVFDAASRLGMPRMRVLDIGGGFTSGPMFDAAAMKINAAIQDSFGNEEELVVIGEPGRYIAETAFTLATKVVGKRVRGELREYWIDDGIYGTFNHMYFDDATFTCMPLACTSKPEDPSCRDFKTYSSTVFGPTCDSLDTVLTDYQLPELQANDFLVFPNMGAYTTSSSSNFNGFSSSVNSTFLAYSQPYRASMF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0211 431 CDD PLPDE_III_ODC 58 402 - -
Pvu9g0211 431 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 87 105 IPR022653 -
Pvu9g0211 431 SUPERFAMILY Alanine racemase C-terminal domain-like 283 412 IPR009006 GO:0003824
Pvu9g0211 431 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 244 261 IPR022657 -
Pvu9g0211 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 87 105 IPR000183 GO:0003824
Pvu9g0211 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 119 IPR000183 GO:0003824
Pvu9g0211 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 209 222 IPR000183 GO:0003824
Pvu9g0211 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 289 308 IPR000183 GO:0003824
Pvu9g0211 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 398 411 IPR000183 GO:0003824
Pvu9g0211 431 PANTHER ORNITHINE DECARBOXYLASE 38 423 - -
Pvu9g0211 431 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 299 398 IPR022643 GO:0003824
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 59 83 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 85 112 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 129 153 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 159 181 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 324 337 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 365 375 IPR002433 GO:0006596
Pvu9g0211 431 PRINTS Ornithine decarboxylase signature 385 398 IPR002433 GO:0006596
Pvu9g0211 431 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 38 423 IPR002433 GO:0006596
Pvu9g0211 431 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 73 298 IPR022644 GO:0003824
Pvu9g0211 431 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 58 414 IPR009006 GO:0003824
Pvu9g0211 431 SUPERFAMILY PLP-binding barrel 65 299 IPR029066 -
Pvu9g0211 431 Gene3D Alanine racemase 69 297 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0211 Pvu-Chr9 3962487 3964180 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0211 K01581 - gmx:547682 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0211 9 3962487 3964180 Pvu9g0211 9 3962487 3964180 ECH