Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0205 ATGGCTTTGATCAAATCATGCGCACGCTTGCGCCACTCTCTTTCACCGCTCCTTCCCCGCACTTTCAACCAACACTGTTCTTCGGATTCACTTCCCGAACCTCTTCTCCAACCCGATCCAAATGACACATGTCAAACTCCAAACCTATCCCCCGAGGAAACCACCTTAGCCGACAAACTCCACGCCGCCATCAAAGATCACCACCGCAGAAACCCCTCACCAAACCCTAACGCCGCTCCCCCCACTCCCAACCTTGCCATCCCCGACCTCTCCCTTGACTTCTCCGCGCTCTCCGCCGCTCAAACACTCTCCCCCGCCGTCGCCCGCCGCGTCATCGAGAAATGCGGCGCTGTCCGCCACGGCATCCCCTTATTCCAATCCCTCGCGTTCTTCAATTGGGCTACCTCACTTGACGGATTTCCCCCCTCGCCGGAGCCCTACGACGAGATGCTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCACGTCATCGACCTCATGAAGACTCGCGGCGTCGAAATCAGCGTTCACACGTTCTCCGCTCTCGTCCGCCGCTACGTGAGGGCCGGATTAGCTGCGGAGGCGGTGCACGCTTTTAACCGTATGGAGGACTACGGCTGCACCCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTATACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGATGGCTGGGATTAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGTTGTGCCGATGCGGGCAAATTACGCGTGCTCATGATGTTTTCGCCGAGATGATCGATTCAGGGTGTGATCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTCACAATCAGATGAAGAGGCTTGGTTGTCCTGCAGATACCATCAGCTACAATTTCATCATTGAGAGTCATTGTAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTCAAGAAAGGGGTTGCTCCTAATGCATCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAATTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCGAAATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAACCTAATGTAAACACTTACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTGGTGAAGGAAATGGTTGAAGAAAAATGCCTAAGACCGAATCTGTCCGTTTATGAAACTGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAATTGGTGGATAAGATGGTTGCGAGGGGATTCGTCACTCGCCCTTTGTAG 1593 0.4852 MALIKSCARLRHSLSPLLPRTFNQHCSSDSLPEPLLQPDPNDTCQTPNLSPEETTLADKLHAAIKDHHRRNPSPNPNAAPPTPNLAIPDLSLDFSALSAAQTLSPAVARRVIEKCGAVRHGIPLFQSLAFFNWATSLDGFPPSPEPYDEMLDLAGKLRHFDLAWHVIDLMKTRGVEISVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFEPDVLVYTSLVYGWCRAGNISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDSGCDPNAVTFNSLMRVHVKAGRTEKVLQVHNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESKSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLVKEMVEEKCLRPNLSVYETVLELLRNAGQLKKHEELVDKMVARGFVTRPL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Pvu9g0205 530 SUPERFAMILY TPR-like 189 426 IPR011990 GO:0005515
Pvu9g0205 530 Gene3D Tetratricopeptide repeat domain 380 449 IPR011990 GO:0005515
Pvu9g0205 530 Gene3D Tetratricopeptide repeat domain 312 379 IPR011990 GO:0005515
Pvu9g0205 530 Gene3D Tetratricopeptide repeat domain 241 311 IPR011990 GO:0005515
Pvu9g0205 530 Gene3D Tetratricopeptide repeat domain 450 523 IPR011990 GO:0005515
Pvu9g0205 530 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 10 529 - -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Pvu9g0205 530 TIGRFAM PPR: pentatricopeptide repeat domain 460 492 IPR002885 -
Pvu9g0205 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 529 - -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Pvu9g0205 530 Pfam PPR repeat 319 349 IPR002885 -
Pvu9g0205 530 Gene3D Tetratricopeptide repeat domain 112 240 IPR011990 GO:0005515
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Pvu9g0205 530 Pfam PPR repeat family 352 397 IPR002885 -
Pvu9g0205 530 Pfam PPR repeat family 246 295 IPR002885 -
Pvu9g0205 530 Pfam PPR repeat family 178 226 IPR002885 -
Pvu9g0205 530 Pfam PPR repeat family 421 469 IPR002885 -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Pvu9g0205 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0205 Pvu-Chr9 3787451 3789664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0205 137 525 Glycosyltransferase AT1G05670 25.641 6.52e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0205 - - gmx:100800850 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0205 9 3787451 3789664 Pvu9g0205 9 3787451 3789664 ECH