Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0201 ATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCAACATCCACAGCGTTCCATTCCCAATTCCGAACCTCACCTTCTTCACTCTTTCTCTATGCTACGAGCTATAAATTTCGTTCTACCATAGCGAGCGCTTGCTCTGGTTTCACCGGCGACTCAGACTCCGATGGAGAGAGAAAATTGAACTTCTCCGGTTTGCGGTTGGAGGAGGCTGTGGATAGCAGAATAGGATCTGCAAAACTGAGACTCGACAGTTGGATCTCTTCCCGCATTAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTAAACGGTCGTGTCGTTGATAAGAAATCAAAGCATCAACCAGAGCAATATGCTTTGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCCTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACGTCGGGGACGCTTGTCAATGGCATTCTTCACCATTGCAATCTTCCAAATGTTGAATTTTCTAAAGAGGAAGGTCTTTCAGATACAGAAGATTGTGATGATGAGGTCAATAGCTATGGCTCCCTGGCCAGTTCTTGTGAAGGGTCACATTCTAGACCGTCTATGTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGATTACTCGTTGTGGCAAAGGATGAGCATTCTCATATGAAATTATCAGAGCAATTTAAGCAACGTACCATCAAGAGGGTTTATGTTAGTCTTACTGCGGGGGTACCCAGGCCAATTTCTGGGCGCGTTGATGTTCCAGTTGGCCGTGATCTTAATAACCGGTTACGTATGACTGCTGTAGCTGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGAAGTTGCTCATTGGTTGAGTGGAAGTTGGAAACTGGACGAACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTACCTTTACTCGGCGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCGTTGCTAAGGCCCCGAAGTCCCATCAGTTTGCATGGCAAAATTGTACAAATGGTTTCTAGTCTAGATAGGCCTTGCCTTCATGCTTTGACACTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTGTAGACTTCGATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAGCGTTTCTTTCTCAAAGCCTTCAAATTTATGA 1377 0.4553 MLSFHSCGCCRVSTSTAFHSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSKPSNL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0201 458 SMART s4_6 81 157 IPR002942 GO:0003723
Pvu9g0201 458 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 79 444 - -
Pvu9g0201 458 SUPERFAMILY Alpha-L RNA-binding motif 80 179 - -
Pvu9g0201 458 Pfam S4 domain 82 119 IPR002942 GO:0003723
Pvu9g0201 458 CDD PseudoU_synth_RluA_like 167 416 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g0201 458 ProSitePatterns Rlu family of pseudouridine synthase signature. 247 261 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g0201 458 Gene3D Pseudouridine synthase 149 431 - -
Pvu9g0201 458 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 79 444 - -
Pvu9g0201 458 CDD S4 82 171 - -
Pvu9g0201 458 ProSiteProfiles S4 RNA-binding domain profile. 81 165 - -
Pvu9g0201 458 Pfam RNA pseudouridylate synthase 166 361 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g0201 458 SUPERFAMILY Pseudouridine synthase 152 443 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pvu9g0201 458 Gene3D - 72 148 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0201 Pvu-Chr9 3755431 3760745 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0201 K06180 - gmx:100810383 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0201 9 3755431 3760745 Pvu9g0201 9 3755431 3760745 ECH