Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0185 ATGCAGCAAGGAGATTACACCTCCGCTCCCTATTATCAATTTTCTCATCACCAAAACCCCAACCCCAACCCCAACCCTTCCGATCCCCACCCCAACAACCTCTACGCCTCTGCTCCTCCCTTCACCCCCAATTACGCTCCTTCCGATTACACTAACTATCATCCTTCCTACCCTCAAAATCCCGATCCTATTCCACCCACTGCTCCTCCTTCCTTCGCTCCCTCTTCCTCCACCCCTAATTTCAATTCGCCCTTCGAATCAAACCCTTCCTACCAACAACCACAACAACAACCCTATTTCCCACCCTATGATCACCATCAAACGCCTTCCAATTACGCCCCTCCCAACCCCAATTCCGCTCCCTCCCTATACAATTCTGCTTCCTTCAGCTACACCGGAGGCTCCTCCGTTCCGCCAATTCCGACCTACGAACCACCCGCCTACGAGCCTCCCGTCAGGCCCGATCAGGGCGGCGGCTATTTAGACGACAGGTACGGAGGAAGCTTCAATAGGAGTCGTTCTTCTGATTTGGGATCCGATTATTATGGAAAGAGCGGTGGTAATTCGAGGTACGAAGCTAGTGGCGGTAATTTGAGGTACGAAGGTAGCGGCGGCAGTGATGATGGTTACGGAGATGGGGTGTATGCTTATCAGGGAGGCAAAGTGGAACCCTATGGGGCGCGTGGCACGGCGCCGAAGTCATCGAATTGGGCGGCATTTGATGATTATGGGAGGTCCATCAGTTTCCCCTCGCAGAAGGAATCTTCTGCTGGGGTTAAGATTGTGAAAGCGGTGCCCAAGGTTGACACCCATGAAGACGTGAAAGGTGGTGGCGTGCAAAAGTTTCGGGTCAAGCTGTTGGCAGAAAGTGGGGGTCAGAGCACCATGGATGTTCTCTGTCAGATTGGCTTGGATGGAATTCGTATGCTGGATCCAAATACCAGCCGGACATTGAGGATTTATCCTCTAGAGAACATAACAAGATGTGATAGAGTCGATTCATCCACCTTTGCATTTTGGTCGAAGAGCCCTGTGGATATTGAGCCAATAAGAATCAGATTGCAATCTAATAGTTACACCACTAACACACTCCTGGATACAGTGACTGCTGCAACAATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGCTGAACCATTGAAAACAAATGAACAGACTCAAGACAGAAAGAAAGTTTTTGGTGATTGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCAGATGAAGCTGTGACAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTATTCGCAAGCACCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTAACTGCCGATGAGAATGCACAGCCTGTGCGAGTTTGTGACCGGTGCATGGCAGAAGTGTCTCAGCGGCTGACTAGTGCCAAGGAGTCATTGAGTAAACCTGCGGTGCAGAGTCATGAGGATCTTGCCAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGACTTCAGGTTCCAAGTCTGATGGATCTGCAAGGCGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCGGGTTCAGAGACCATTGAGTGTGGAGTGTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1701 0.4968 MQQGDYTSAPYYQFSHHQNPNPNPNPSDPHPNNLYASAPPFTPNYAPSDYTNYHPSYPQNPDPIPPTAPPSFAPSSSTPNFNSPFESNPSYQQPQQQPYFPPYDHHQTPSNYAPPNPNSAPSLYNSASFSYTGGSSVPPIPTYEPPAYEPPVRPDQGGGYLDDRYGGSFNRSRSSDLGSDYYGKSGGNSRYEASGGNLRYEGSGGSDDGYGDGVYAYQGGKVEPYGARGTAPKSSNWAAFDDYGRSISFPSQKESSAGVKIVKAVPKVDTHEDVKGGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRVDSSTFAFWSKSPVDIEPIRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPAEPLKTNEQTQDRKKVFGDWMNLIKPANEEKDHWVPDEAVTKCTACGTDFGAFIRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVSQRLTSAKESLSKPAVQSHEDLARKLQEELERNRKTSGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0185 566 MobiDBLite consensus disorder prediction 58 73 - -
Pvu9g0185 566 Coils Coil 496 516 - -
Pvu9g0185 566 Pfam FYVE zinc finger 417 481 IPR000306 GO:0046872
Pvu9g0185 566 MobiDBLite consensus disorder prediction 168 182 - -
Pvu9g0185 566 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 421 481 IPR017455 -
Pvu9g0185 566 MobiDBLite consensus disorder prediction 74 137 - -
Pvu9g0185 566 CDD PTB 268 339 - -
Pvu9g0185 566 SMART fyve_4 413 482 IPR000306 GO:0046872
Pvu9g0185 566 MobiDBLite consensus disorder prediction 1 21 - -
Pvu9g0185 566 PANTHER PROTEIN FREE1 1 566 IPR045893 GO:0036258|GO:0043130
Pvu9g0185 566 SUPERFAMILY FYVE/PHD zinc finger 416 488 IPR011011 -
Pvu9g0185 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 486 IPR013083 -
Pvu9g0185 566 PANTHER PROTEIN FREE1 1 566 - -
Pvu9g0185 566 MobiDBLite consensus disorder prediction 1 194 - -
Pvu9g0185 566 SUPERFAMILY PH domain-like 283 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0185 Pvu-Chr9 3198738 3206425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0185 399 482 EF-hand Containing Proteins AT3G14270 33.673 5.27e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0185 - - gmx:100794840 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0185 9 3198738 3206425 Pvu9g0185 9 3198738 3206425 ECH