Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0155 ATGTCTGCATCTGAAGCGGAGAAGAAGGTGGAGGAAGAGAGCGAGGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGTGCTGGGATATCATTGGCCGGCGCAAGGGTGCCGTCGACGGCAACCTCGTCTCTCCCTCGCGCCTCCGTCCTCTTGTCGGGGTTGATATTCGTTTCGTTGCGTCCGGTTGCGTCTCGTGTCATTGCGTTGCATTGGACGTCGAAGGGCGCTGCTATACTTGGGGACGGAATGAGAAAGGGCAACTGGGTCATGGAGATATGATTCAGCGTGATAGACCAACTGTCGTGTCTGAACTTTCCAAGCACAAAATTGTCAAAGCTGGATCAGGGAGGAGCCATACAGTGGTTGTTACGGAGGATGGAAATTCCCTGGCCTTTGGATGGAACAAGCATGGACAGCTAGGTTCGGGTTCCGTGAGAAATGAAATTGAGTCTTCACCTGTTCGCTGTCTTGTGTCTGAAGTAAATCATGCTGCTTGTGGGGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGAGCTTCTATACTAACTGCAGGGCTTCCCCAGTATGGACAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGCCCTCGAGGGATTGCTGCTCTTGCTGGGGAAACAGTTGTGAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTCTGTCTACACGTGGGGTTTCGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGTCGTGTTGATGTTTTTCAGAATAGAAATATTTTGCCACCTGATGCCATTATTTCTGCTGGTTCTGTGAGTTCTTCATGTACTGCAGGTGGTGGGCAGTTGTACATGTGGGGCAAATTAAAGAACACCGGTGATGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGGTGGAATATACGGTGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCCTCTTGCATAAGCTGGGGACATGCTCAGAATGGTGAGCTGGGATATGGACCTACTGGACAGAAGTCCTCGGCTGTACCCAAGAAGGTGGATATACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGACGGGAAAGCTGTTAGTGAAGGTAATGAGGCTGTAAATACAACTCCAGTTCCTAAGCAGGCTGCAAAAAAGGGTGCCAAGGCAGCTGACAATTCGAAGAAGAGGAAAAAGTCAAAAGATTCATCCGAGTCAGAAGAGGAAGAGGAAGAAGAAGATGCTGAAGAAAGTGATGATGATAGTGAGGAGGATGAAGTTAATGGTGAGGCTGAGGTGAAAAGGCTGCGTGGTTCTGGTAAAGGCAGAGGTAAGGCATCCAAAACGTCCAGTGCCAAGGGAAAGGGCTCGGCTGGAAAGGGAAAAGGTGGTGGCCGAGGACGCGGTGGAACTTCAGCTAATAAGAACAGTTCTAAATCCCCTCCGGTGAAATCTGGTAAGAGAGGAAGACCCCGGAAATCATAA 1644 0.4878 MSASEAEKKVEEESEEVKGGELLFCGATCWDIIGRRKGAVDGNLVSPSRLRPLVGVDIRFVASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSELSKHKIVKAGSGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVNHAACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRGIAALAGETVVKVACGTNHTVAVDKNGSVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNILPPDAIISAGSVSSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDILEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVSEGNEAVNTTPVPKQAAKKGAKAADNSKKRKKSKDSSESEEEEEEEDAEESDDDSEEDEVNGEAEVKRLRGSGKGRGKASKTSSAKGKGSAGKGKGGGRGRGGTSANKNSSKSPPVKSGKRGRPRKS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0155 547 Gene3D - 210 439 IPR009091 -
Pvu9g0155 547 Gene3D - 11 209 IPR009091 -
Pvu9g0155 547 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Pvu9g0155 547 SUPERFAMILY RCC1/BLIP-II 19 402 IPR009091 -
Pvu9g0155 547 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Pvu9g0155 547 Coils Coil 454 474 - -
Pvu9g0155 547 MobiDBLite consensus disorder prediction 425 547 - -
Pvu9g0155 547 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Pvu9g0155 547 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Pvu9g0155 547 PANTHER PROTEIN RCC2 4 531 IPR028641 -
Pvu9g0155 547 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Pvu9g0155 547 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Pvu9g0155 547 Pfam Regulator of chromosome condensation (RCC1) repeat 247 282 IPR000408 -
Pvu9g0155 547 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Pvu9g0155 547 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Pvu9g0155 547 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Pvu9g0155 547 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Pvu9g0155 547 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Pvu9g0155 547 MobiDBLite consensus disorder prediction 459 480 - -
Pvu9g0155 547 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Pvu9g0155 547 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Pvu9g0155 547 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Pvu9g0155 547 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Pvu9g0155 547 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Pvu9g0155 547 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0155 Pvu-Chr9 2391557 2398218 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0155 - - pvu:PHAVU_009G015100g 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0155 9 2391557 2398218 Pvu9g0155 9 2391557 2398218 ECH