Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0115 ATGGACCTTCGCCTAGTGTTATTCACTTTGCTAGCTCTGTTACAGCTCTTTCTAATCTTATCTTCGGTAGAAGCCGACAATTTGTCCACAAGATTTCTTTTGACATCCAATGCCAACACAACGGGGGAAAAACATTTCGAGGATTACTGTGCAATGTATGACATTTGTGGAACGCGCAGTGATGGTAAAGTAGTGAACTGTCCATATGGTTCCCCAGCTGTGAAGCCAGATGATTTGTTCTCATCCAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAGGACGCAAGTCCAACAGGCCATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATATTTTTTGTGAGCTGACATGTTCTCCGAACCAGAGTTTATTCATCAATGTGACCTCAGTTGACAATGTTGATGGTAATTTGACAGTGGGTGGGATTGATTATTTAATAACCGATGTTTATGGTGAAGGGTTATATGAATCATGCAAAGAGGTAAAGTTTGGCACTATGAATTCTCGAGCTCTACAGTTCATTGGTGCTGGTGCTCAAAATTTTAAAGATTGGTTTGCGTTTATTGGTAGAAAAGCAGTCCCCCGCGGTCTTGGTTCACCATATGCAATTACATTCAGGTCAAGTGCAACTGAGTCATCTGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCCTCTTCAGTATGCTCCATTTCATCTTCAACTACCACCAATAAGAAGGATTCATGCTCCGTGAAAGTTGGGACTTTAATCGTTAAGTGTGTTGACTTGATTTTGGCAGTCTTATACATTATACTGATTTGTGTATTCTTGGGTTGGGGATTGTATCATCGGATTAGAGAAAGAAAACCTACATACAGAACTAAATCAGTGTCTACTGTCATTAGTGATGGTGCACTATATACTCGTAACAGAGAGAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCCCAAGAAAACAGAAATAAAGTCCAGCTCTCTGCTGTGCAGGGATATATGGCAAACTTTTACAGGAAATATGGATTGTATGTAGCTAGACATCCGATTATGGTGTTGGCTGCATCCGTGGTTATAGTTCTTCTCCTCTGTGTTGGTCTAATCCAGTTCAAGGTTGAGACACGACCTGAGAAGCTGTGGGTAGGACCTGGAAGCAAAGCAGCCCAAGAGAAGCAGTTTTTTGACACTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCGTGTGAATAGTACGTCACCAAGAATTGTGTCAGAGGACAACATTAGGTTTCTTTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTCGATGGTATCTCTGCAAGACATCTGTATGAAGCCCCTAGACAAAGATTGTGCCACTCAAAGTGTACTGCAGTACTTCAAAATGGATCCCAAAAATTTTGATGATTACGGGGGAGTTGAGCATCTCAATTACTGTTTCGAGCATTATTCCTCAGCAGACCAATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACTGTATTAGGAGGCTTTTCTGGAAATGACTATTCTGGGGCATCTGCATTCGTTGTAACTTATCCGGTCAATAATGCTGTTGATAACGAAGGTAATGGAACAAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGCTGGTGAAGGATGAACTGTTACCAATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAAGAAGAGTTGAAAAGAGAAAGTACTGCAGATGCTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCACTTACGTTAGGGGATACACTGCACCCTTCATTTTTCTATATTTCTTCAAAGGTGTTACTTGGTCTTTCTGGAGTCATTCTTGTTATGTTGTCTGTCCTTGGGTCGGTTGGATTTTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCTTTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAACCACTGGAGTTGCCCTTAGAAGGACGAGTAAGCAATGCACTTATTGAAGTTGGACCATCAATAACATTGGCCAGTGTTTCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTTTTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCTTTTGTAGCTTTGATAGTTCTTGACTCTTTGCGAGCAGAGGATAAGAGGGTTGATTGTTTTCCATGCATAAAAGTACGTGCAGACCCTGATATAGGAATTGGACAAAGAAAACCTGGCTTATTGACTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGTGTAAAAATAGTTGTCATTGCTATTTTTGTGGGATTTACTTTTGCTAGTATTGCATTGAGCACTAGAGTTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGAGATTCATATCTTCAGGGTTATTTCAGTAATGTTTCAGAATATCTCAGAATTGGACCTCCTTTGTATTTTGTTGTGAAAAACTATAATTACAGCTCAGAATCACCACAAACGAATCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAAAGCGGCCCTAGTTCCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCGTGGCTTGATGATTTTCTAGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGACAGCTCCTGTGATTCAGTTGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCAGAATGATCGGCCATCTACAACTCAATTTAGGGAGAAACTGCCATGGTTCCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCATACACCAGCAGTGTTGAACTGAAAGGCTACAACAATAGCATTATTCCAGCCTCATCATTTCGTACATATCATACCCCACTTAACAAGCAGATTGACTACGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCTATTGGTGCAGTTTTTATCGTGTGCTTGGTTATCACGGGCAGTTTATGGAGTTCATCAATCATTTTGTTAATCTTGGCAATGGTTGTCGTTGATCTTATGGGAGTGATGACTATTCTGAATATCCAGTTGAATGCCCTCTCGGTGGTCAACCTTGTTATGTCAGTCGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCAAGTGGAGACAGAGATCAACGTGCCAAGGAAGCTTTGAGTACAATGGGTGCTTCAGTGTTCAGTGGCATCACTCTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTATTTGTGATTTATTACTTTCGGATGTACTTGTCGTTGGTGCTGCTTGGTTTCTTGCACGGACTTGTCTTTTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCAATCACTGAGCAAGGGGAAAATCGTTCATCAACATCTTCACAGCAGTAA 3882 0.4091 MDLRLVLFTLLALLQLFLILSSVEADNLSTRFLLTSNANTTGEKHFEDYCAMYDICGTRSDGKVVNCPYGSPAVKPDDLFSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNIFCELTCSPNQSLFINVTSVDNVDGNLTVGGIDYLITDVYGEGLYESCKEVKFGTMNSRALQFIGAGAQNFKDWFAFIGRKAVPRGLGSPYAITFRSSATESSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSISSSTTTNKKDSCSVKVGTLIVKCVDLILAVLYIILICVFLGWGLYHRIRERKPTYRTKSVSTVISDGALYTRNREKDENLPMQIHMMEDAQENRNKVQLSAVQGYMANFYRKYGLYVARHPIMVLAASVVIVLLLCVGLIQFKVETRPEKLWVGPGSKAAQEKQFFDTHLAPFYRIEQLILATVPDRVNSTSPRIVSEDNIRFLFEIQKKVDAIRANYSGSMVSLQDICMKPLDKDCATQSVLQYFKMDPKNFDDYGGVEHLNYCFEHYSSADQCMSAFKAPLDPSTVLGGFSGNDYSGASAFVVTYPVNNAVDNEGNGTRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSFFYISSKVLLGLSGVILVMLSVLGSVGFFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLELPLEGRVSNALIEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVRADPDIGIGQRKPGLLTRYMKEVHAPILSIWGVKIVVIAIFVGFTFASIALSTRVEPGLEQEIVLPRDSYLQGYFSNVSEYLRIGPPLYFVVKNYNYSSESPQTNQLCSISRCNSDSLLNEIAKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDSSCDSVGTCKDCTTCFRHSDLQNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYNNSIIPASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGAVFIVCLVITGSLWSSSIILLILAMVVVDLMGVMTILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALSTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSITEQGENRSSTSSQQ* 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0115 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1081 1272 - -
Pvu9g0115 1293 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 7 1290 - -
Pvu9g0115 1293 PANTHER PATCHED FAMILY PROTEIN 7 1290 - -
Pvu9g0115 1293 Pfam Patched family 456 906 IPR003392 GO:0016021
Pvu9g0115 1293 Pfam Patched family 1062 1271 IPR003392 GO:0016021
Pvu9g0115 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 608 794 - -
Pvu9g0115 1293 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1272 IPR004765 GO:0005319|GO:0016021
Pvu9g0115 1293 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Pvu9g0115 1293 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Pvu9g0115 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 800 - -
Pvu9g0115 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1079 1276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0115 Pvu-Chr9 1841055 1856731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0115 44 1291 Miscellaneous Gene Families AT1G42470 73.141 0.0 1852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0115 K12385 - gmx:100784611 2335.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0115 9 1841055 1856731 Pvu9g0115 9 1841055 1856731 ECH