Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2978 ATGAAGAACCTTCTCTTCCTTTTTCCCTTTCTCTTTCTCCTCCTCTCCTCCGCCGCCAGCGCCGCCCACAACATCACGCGCATCCTCGAGAAACACCCAGGCTTCTCCACCTTCAACCACTACCTCTCCGCCACCCACCTCGCCGACGAGATAAACCGCCGCCAGACCATCACCGTCCTCGCCATCGACAATGGCGCCATGAACTCCCTCCTGGACAAGCACCTCTCCCTCCCCACTCTCAAAAACGTCCTCTCCCTCCACGTCCTCGTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCAACAACAGCACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGAGCCGCCGCCGGCACCTCCGGCTACGTCAACATCACCAACCTCAAGGGCGGCAAGGTGGGCTTCGCCGCCGAAGACAACGACGGCTCCCTCCACTCCTTCTACGTCAAATCCGTCCAAGAATTCCCCTACTACATCTCCGTCCTCCAAATCAGCAACCCCATCAGCTCCGCCGACGCCGAAGCCCCCACCGCCGCACCCTCCGCCATCGACCTCATCTCCATCATGTCCAAACAAGGCTGCAAGGCCTTCGCCGACCTCTTGCGAGGCTCCAAAGCGCTTCCCTCCTTCAAGGAAAGCATCGACGGCGGCTTAACCGTTTTCTGCCCCACCGACAGCGCCGTCAACGGCTTCGCCCCCAAATACAAAAACCTCACCGACTCCCAAAAAGTTTCCCTTTTGTTATACCACGGCGTCCCCGTTTACCAGTCCCTGCAGATGCTCAAATCCAGCAACGGCATTATCAACACTCTCGCCACAGAGGGAGCCAACAAGTACGATTTCACCGTGCAGAACGACGGCGAAGACGTGAGCTTGAAGACGAAGGTTAACACTGTGAGTATCATAGGCACCCTCATAGATCAAGACCCTTTTGTTGCCTACAAGATCAACAAAGTGTTGATGCCCAGAGAGTTGTTCAAGGCCTCCGACGTGGACGAAGCACCCGCAGAGTCACCAAAGCCTCCGAAGAAGAAGACCAAGAAGGGGGGGCAAGGTTCCTCCGCCGCCGATGCTCCCGCCGACGGACCCGCCTCGGATTCCGACGATCAGAGAGCCGCCGATGAAGACAGCAATGGGGTAAGTGGATTGCACGACGTGAGATTGGTGGCGTTGTTGAGTGTGGTGATTGGATTTTTGAGTCTATGA 1212 0.5743 MKNLLFLFPFLFLLLSSAASAAHNITRILEKHPGFSTFNHYLSATHLADEINRRQTITVLAIDNGAMNSLLDKHLSLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGSLHSFYVKSVQEFPYYISVLQISNPISSADAEAPTAAPSAIDLISIMSKQGCKAFADLLRGSKALPSFKESIDGGLTVFCPTDSAVNGFAPKYKNLTDSQKVSLLLYHGVPVYQSLQMLKSSNGIINTLATEGANKYDFTVQNDGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVDEAPAESPKPPKKKTKKGGQGSSAADAPADGPASDSDDQRAADEDSNGVSGLHDVRLVALLSVVIGFLSL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2978 403 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 392 IPR033254 -
Pvu8g2978 403 Pfam Fasciclin domain 196 324 IPR000782 -
Pvu8g2978 403 Pfam Fasciclin domain 34 107 IPR000782 -
Pvu8g2978 403 SMART fasc_3 221 325 IPR000782 -
Pvu8g2978 403 MobiDBLite consensus disorder prediction 332 346 - -
Pvu8g2978 403 ProSiteProfiles FAS1/BIgH3 domain profile. 22 189 IPR000782 -
Pvu8g2978 403 ProSiteProfiles FAS1/BIgH3 domain profile. 183 322 IPR000782 -
Pvu8g2978 403 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 3 392 - -
Pvu8g2978 403 MobiDBLite consensus disorder prediction 332 382 - -
Pvu8g2978 403 Gene3D FAS1 domain 187 324 IPR036378 -
Pvu8g2978 403 Gene3D FAS1 domain 21 154 IPR036378 -
Pvu8g2978 403 SUPERFAMILY FAS1 domain 28 149 IPR036378 -
Pvu8g2978 403 SUPERFAMILY FAS1 domain 181 325 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2978 Pvu-Chr8 59259350 59261107 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2978 - - gmx:100805178 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2978 8 59259350 59261107 Pvu8g2978 8 59259350 59261107 ECH