Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2883 ATGGCGCAGGTGCTGTACATGGCTTTACCTGTACCCGCAAAACCCCGCAAAGCTGCATCATCGTCTTCTTCTTCTTCTTCCAAGCCGTTGAAGCTTCCCCGTAGAATCCGCGGCACCAACATATCCATTCCCACCACTGCCGAAGGCAGTGGCAAACGTTTGCTCAAAACCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCTGCCGTGAGATTGATGCGAATTGAGTTCGGTGGCGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCCGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGTTTTCGCACTCGGGAATTGAATCATCACGATCTTAGATTGGTCACAGACATTGTTGGGGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTCACTATGTCTTGAAAAAGATATATCTAGCATGGAACCTCTTCTGTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCACCTTATGCTGTAGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAGAACGGTACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGCACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAATAACAGTGAGCCCAGTTTCAGCTTAAGAGCAGACCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTGGCACAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCATTGCATTTAGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTCCTCAAGAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCGTTGATGGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCATCTCTTTTAAGTGGACAAGGTAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGTACATTGACTGATAATGGACAACTCAAGAGTGACAAAGTTTTGTTGGACGCTCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTAGAGGATATGGAAGAACTGACGAAATTGCAGGATGAGCTCCTAGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTGTAAGACATCCGGATTTCCACATTGATCCTGTTGACAGATATGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGTTCCTTTGCAGCTCGTTTAGTACGTGATTCATAG 1599 0.4515 MAQVLYMALPVPAKPRKAASSSSSSSSKPLKLPRRIRGTNISIPTTAEGSGKRLLKTQKLNLEVSPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLINSLCLEKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRADRASGFSRDDLVAQLNALKVPHKLSLHLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIVDGCAAPGGKTLYMASLLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELTKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHIDPVDRYVPPDFVTSSGFFFSNPVKHSLDGSFAARLVRDS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2883 532 Pfam 16S rRNA methyltransferase RsmB/F 334 528 IPR001678 GO:0008168
Pvu8g2883 532 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 255 531 IPR001678 GO:0008168
Pvu8g2883 532 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 29 531 - -
Pvu8g2883 532 PRINTS Viridiplantae FMU-related RCMT signature 73 96 IPR023268 -
Pvu8g2883 532 PRINTS Viridiplantae FMU-related RCMT signature 97 113 IPR023268 -
Pvu8g2883 532 PRINTS Viridiplantae FMU-related RCMT signature 212 225 IPR023268 -
Pvu8g2883 532 PRINTS Viridiplantae FMU-related RCMT signature 489 501 IPR023268 -
Pvu8g2883 532 CDD AdoMet_MTases 342 468 - -
Pvu8g2883 532 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 29 531 IPR023267 GO:0001510
Pvu8g2883 532 MobiDBLite consensus disorder prediction 15 35 - -
Pvu8g2883 532 Gene3D Sun protein; domain 3 223 328 - -
Pvu8g2883 532 SUPERFAMILY NusB-like 104 239 IPR035926 -
Pvu8g2883 532 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 109 530 IPR004573 GO:0006364|GO:0008649
Pvu8g2883 532 PRINTS RNA (C5-cytosine) methyltransferase signature 315 329 IPR023267 GO:0001510
Pvu8g2883 532 PRINTS RNA (C5-cytosine) methyltransferase signature 344 354 IPR023267 GO:0001510
Pvu8g2883 532 PRINTS RNA (C5-cytosine) methyltransferase signature 412 424 IPR023267 GO:0001510
Pvu8g2883 532 PRINTS RNA (C5-cytosine) methyltransferase signature 462 478 IPR023267 GO:0001510
Pvu8g2883 532 PRINTS RNA (C5-cytosine) methyltransferase signature 513 530 IPR023267 GO:0001510
Pvu8g2883 532 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 227 530 IPR029063 -
Pvu8g2883 532 Pfam NusB family 99 205 IPR006027 GO:0003723|GO:0006355
Pvu8g2883 532 Gene3D Vaccinia Virus protein VP39 329 532 IPR029063 -
Pvu8g2883 532 Gene3D - 68 214 IPR035926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2883 Pvu-Chr8 58623052 58628857 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2883 K03500 - gmx:100779327 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2883 8 58623052 58628857 Pvu8g2883 8 58623052 58628857 ECH