Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2875 ATGGCGCCGGCGGCAGCGAGAAGCGCAGGCGCCGTCGGTGTTGGTGTTGCAATCTTTATCTCAGTCGCTCTCACCACGTATTTCATCTGTGACCGCCGCTCTAGGAAGAAGAACGTATCAAGGAAGAATGGGCTCGTGGAGGCCATCGGCAACACCCCTCTCATTCGGATCAACAGCCTCTCCGCTGCCACTGGCTGTCAAATTCTCGGCAAGTGCGAGTTCTTGAATCCCGGAGGCAGCGTCAAAGACCGTGTTGCTCTTCAAATCATTCAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACCGAAGGGAGTGCTGGAAGTACTGCCATTAGCATTGCCACTGTTGCTCCTGCTTATGGGTGCAAAACCCACGTGGTTATACCAGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACTCACAAAGACCATTTTGTGAATATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTTTGCGCTGAAACAGAGAAATTCACAACTGAATGGCAAGGAGGACACTGCAAAAATAAATGGCGATGAATCTGATGGACACAATTATAGCTCTCTGTTTCCTAGTGACTGTCAAGGTGGGTATTTTGCTGATCAGTTTGAGAACTTAGCGAACTTCAGGGCCCATTACAATGGTACAGGACCTGAGATTTGGGAACAGACCAATGGAAAGTTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTGTTTCTACGTTTCTCCAGGAAAAGAATCCAGACATCAAATGCTTCCTCGTAGATCCTCCAGGCTCTGGTTTGTTTAATAAGGTAACTCGGGGAGTGATGTACACCAAAGAGGAGGCTGAAGGAAGAAGACTTAAGAATCCATTCGACACTATAACAGAAGGAATTGGAATTAACAGGATAACAAAGAATTTTGCGATGGCAAAACTTCATGGCGCTTTTAGAGGCACCGATCGGGAGGCTGTTGAAATGGCAAGGTTTCTTTTGAAGAACGATGGGCTCTTCCTTGGCAGTTCTTCTGCAATGAACTGTGTCGGAGCAGTTAGAGTAGCACAGGCAATTGGTCCTGGTCACACAATTGTGACCATACTCTGCGATAGTGGAATGAGACATTTGAGCAAGTTCTGTAATGCTGAATACTTGTCTGGGCTGGGTTTGACACCGACAGCAGCTGGATTGGAGTTCTTAGGCATCGAATGA 1269 0.4799 MAPAAARSAGAVGVGVAIFISVALTTYFICDRRSRKKNVSRKNGLVEAIGNTPLIRINSLSAATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKQRNSQLNGKEDTAKINGDESDGHNYSSLFPSDCQGGYFADQFENLANFRAHYNGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSTFLQEKNPDIKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITKNFAMAKLHGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFCNAEYLSGLGLTPTAAGLEFLGIE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2875 422 Pfam Pyridoxal-phosphate dependent enzyme 48 389 IPR001926 -
Pvu8g2875 422 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 71 89 IPR001216 GO:0006535
Pvu8g2875 422 Gene3D - 49 78 IPR036052 -
Pvu8g2875 422 Gene3D - 231 395 IPR036052 -
Pvu8g2875 422 Gene3D - 79 189 IPR036052 -
Pvu8g2875 422 Gene3D - 216 230 IPR036052 -
Pvu8g2875 422 PANTHER CYSTATHIONINE BETA-SYNTHASE 32 420 - -
Pvu8g2875 422 PANTHER CYSTEINE SYNTHASE-RELATED 32 420 - -
Pvu8g2875 422 CDD CBS_like 50 396 - -
Pvu8g2875 422 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 39 403 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2875 Pvu-Chr8 58589154 58591704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2875 40 396 Miscellaneous Gene Families AT3G04940 29.248 1.11e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2875 K01738 - gmx:100799081 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2875 8 58589154 58591704 Pvu8g2875 8 58589154 58591704 ECH