Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2789 ATGACATCAAAAAGGGAAAGGGAAGTTGTTGATAGAGTAGAGGATAAAGGGCTTGATAATGAATCAAAAAGGCAGAAGCTGGATGAGGATTCTTTATCCTCTCCTCCTCCAGTCTCCATTGCGAATCCACTTTCTGGGTTGGCTAATAATTATGCTGACATTGACGAGGAGGAAGAATATGTTCAAAGGGAAAGGGGTTCTATTAATGAGATGAGGAATGATGGGTCCCAGCACAATGGGCATAGATACGGAGAGGCTGATGATAGTGATAAAGAAGATGATTCACAATTATTTAGTGGAAGAAACAATCGTCAGGTTGAGGTTCGGAAGGATTGTCCTTATCTTGATACTGTTAATAGACAGGTTTTGGATTTTGACTTTGAAAAATTCTGTTCTGTCTCCCTATCAAATTTAAATGTGTATGCATGTTTGGTTTGTGGGAAGTATTACCAAGGGAGAGGGAAGAAGTCTCATGCATATACACATAGTCTGGAAGCTGGGCACCATGTTTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGGCATGTCTTAAATCCAAGACTCACTGCAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCACTTGATGGTTCTAGTTACCTTCCTGGAATGGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTCATCCCTGAAAATTATCAACACTGTAAATCTCCACTTGTTCATCGATTTGGTGAGCTCACTAGGAAAGTATGGCATGCACGAAACTTCAAAGGACAGGTCAGTCCACATGAGTTTCTACAAGCAGTGATGAAAGCCAGTAAGAAAAGGTTTCGGATAGGTGCACAATCTGACCCAGTTGAGTTCATGTCATGGCTGCTTAATACACTACATGCAGATCTTAAGACATCAAAAAAGAATAACAGCATAATCTATGACTGTTTTCAGGGTGAACTTGAGGTTGTGAAAGAGATTCCTAACAAAGGGGCCATTGATAAGAAAGAAAACAATGAAAACCAGAACAATGCTGAGAAACTTTTGGATGGGGTAAATGAGCGACATGCATTTGTCAAAGAAACTTCTAAAATGCCTTTTCTAATGTTAGGTTTGGACTTGCCACCACCTCCTCTTTTCAAGGATGTGATGGAAAAAAATATAATACCACAGGTTCCACTCTTTAACATACTGAAGAAGTTTGATGGTGAAACTATCACAGAGGTGGTCCGTCCTCATATAGCAAGGATGAAATATCGTGTTACTAGATTGCCTAAGTATATGATTCTTCACATGCGGCGGTTTACTAAGAATAATTTTTTTGTGGAAAAGAATCCTACATTAGTCAACTTTCCTGTGAAGAACTTGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAGAAATTGGGATCTAAATATGATTTAATTGCTAATGTTGTTCATGATGGCAAACCTGGTGAGGGTTTGTACCGGGTATTTGTGCAGCGCAAATCTGAAGAACTATGGTATGAGATGCAGGATTTGCATGTCTCCGAAACACTTCCTCATTTGGTTGCACTATCAGAAACTTATATGCAGATTTATGAACAGCAAAGCTGA 1704 0.3885 MTSKREREVVDRVEDKGLDNESKRQKLDEDSLSSPPPVSIANPLSGLANNYADIDEEEEYVQRERGSINEMRNDGSQHNGHRYGEADDSDKEDDSQLFSGRNNRQVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRLTAKEVEQLDKNKQWSRALDGSSYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVHRFGELTRKVWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVEFMSWLLNTLHADLKTSKKNNSIIYDCFQGELEVVKEIPNKGAIDKKENNENQNNAEKLLDGVNERHAFVKETSKMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETITEVVRPHIARMKYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLGSKYDLIANVVHDGKPGEGLYRVFVQRKSEELWYEMQDLHVSETLPHLVALSETYMQIYEQQS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2789 567 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 390 566 - -
Pvu8g2789 567 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 56 358 - -
Pvu8g2789 567 MobiDBLite consensus disorder prediction 1 30 - -
Pvu8g2789 567 SMART Zf_UBP_1 130 179 IPR001607 GO:0008270
Pvu8g2789 567 ProSiteProfiles Zinc finger UBP-type profile. 110 207 IPR001607 GO:0008270
Pvu8g2789 567 Coils Coil 366 386 - -
Pvu8g2789 567 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 232 566 IPR028889 -
Pvu8g2789 567 MobiDBLite consensus disorder prediction 1 46 - -
Pvu8g2789 567 PANTHER BNAA06G13940D PROTEIN 56 358 - -
Pvu8g2789 567 PANTHER BNAA06G13940D PROTEIN 390 566 - -
Pvu8g2789 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 200 IPR013083 -
Pvu8g2789 567 CDD Peptidase_C19M 113 564 IPR033809 GO:0000245|GO:0006397
Pvu8g2789 567 SUPERFAMILY Cysteine proteinases 229 565 IPR038765 -
Pvu8g2789 567 Gene3D Cysteine proteinases 201 567 - -
Pvu8g2789 567 Pfam Ubiquitin carboxyl-terminal hydrolase 232 563 IPR001394 GO:0004843|GO:0016579
Pvu8g2789 567 SUPERFAMILY RING/U-box 110 204 - -
Pvu8g2789 567 MobiDBLite consensus disorder prediction 69 102 - -
Pvu8g2789 567 Pfam Zn-finger in ubiquitin-hydrolases and other protein 131 192 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2789 Pvu-Chr8 58009034 58015519 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2789 K12847 - gmx:100792642 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2789 8 58009034 58015519 Pvu8g2789 8 58009034 58015519 ECH