Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2448 ATGGCTGTGCATTTTCTTCTTCTGCTTTTTGCAGTGTCTCTTGTTGTAGCTGATGACGAAGCATTTATTGGAGTGAACATTGGAACAGATCTCTCTGATATGCCACACCCTACTCAAGTGGTAGCTCTACTTAAAGCCCAGCAAATACGGCATGTTAGACTGTATGATGCCGACCAAGCTATGCTCCTTGCACTAGCGAAGACGGGCATTGAAGTTGTTGTGACTGTACCTAATGAAGAGCTCCTAGCAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTCCCGCAATGTGGTAGCACATTATCCAGCCACCAATATCACAGCCATTTGTGTTGGTTCTGATGTTTTAACTTCCCTCCCAAATGCGGCAAAAGTACTTGTCAGCGCCATTAAGTACATTCATTCAGCCCTTGTTGCTTCGAATCTTGATCGCCAAGTTAAAGTTTCGACACCCCTTTCCTCTTCCATCATCCTTGATTCATTTCCACCTTCCCAGGCTTTCTTTAACAGATCACTCAATCCAGTTTTAGACCCTCTACTTGATTTCTTGCAATCCACTGGATCTTATCTAATGCTGAACATTTACCCTTACTATGACTACATGAGATCAAATGGAGTGATTCCATTAGACTATGCACTCTTCAAAACTCTCCCTCCCAACAAAGAAGCTGTCGATTCAAACACCCTTCTTCACTACACCAATGTCTTTGATGCCATGGTTGATGCTGCATACTTTGCCATGGCTTTTCTGAACTACAGCAACATTCCTGTAGTAGTGACCGAGTCAGGGTGGCCCTCTAAAGGTGGCTCCAACGAACCTGATGCAACTGTAGACAATGCCAACACTTACAACAGCAATCTGATCAAGCATGTGTTCAACAAAACCGGAACTCCCAAACATCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAACGAGGATACGAAGCCAGGGCCTATATCTGAGAAGAACTGGGGACTATTTGATTCAAATGGAGCACCTGTCTACATTCTTCGCTTGACAGAATCAGGGGCACTCCTAGCAAATGATACCAGTAACCAAACCTTCTGCATTGCAAAAGATGGTGCTGACCCGAAGATGCTGCAGGCTGCATTAGATTGGGCATGTGGACCAGGCAAGGTCGAATGCTCTCCATTGCTGCAAGGGCAACCATGCTATGAACCAGACAATGTGATTGCTCATGCAAATTATGCTTTTGACACTTACTATCATAAGATGGGAAAAACTCCCGATGCATGTGACTTCAACGGTGTAGCTACCATCTCTACCTCAGATCCAAGTCATGGTTCTTGTTTATTTCCTGGAAGTCTTGGCAAAAATGGCACCTTAGGTAACTTCACAGCTCCATCCATGAATTCTACAAATTCAGATTCCTCGGCCTACAACCTTGGCAACTGTGACTTGAGAATTAGAAGTCTTCTAATGGTAACAGGATTTCTAATATGGGGAGTGGTTTTGCTATGA 1497 0.4409 MAVHFLLLLFAVSLVVADDEAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLLALAKTGIEVVVTVPNEELLAIGQSNSTAANWVSRNVVAHYPATNITAICVGSDVLTSLPNAAKVLVSAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNPVLDPLLDFLQSTGSYLMLNIYPYYDYMRSNGVIPLDYALFKTLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMAFLNYSNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIAVSTYIYELYNEDTKPGPISEKNWGLFDSNGAPVYILRLTESGALLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSHGSCLFPGSLGKNGTLGNFTAPSMNSTNSDSSAYNLGNCDLRIRSLLMVTGFLIWGVVLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2448 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Pvu8g2448 498 Gene3D Glycosidases 22 349 - -
Pvu8g2448 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Pvu8g2448 498 SMART X8_cls 359 444 IPR012946 -
Pvu8g2448 498 Pfam X8 domain 360 431 IPR012946 -
Pvu8g2448 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Pvu8g2448 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 482 IPR044965 GO:0004553|GO:0005975
Pvu8g2448 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 482 - -
Pvu8g2448 498 Gene3D - 353 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2448 Pvu-Chr8 55085511 55088526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2448 17 467 Glycoside Hydrolase AT1G66250 75.938 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2448 K19891 - gmx:100799965 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2448 8 55085511 55088526 Pvu8g2448 8 55085511 55088526 ECH
Pvu1g2378 1 49134777 49137975 Pvu8g2448 8 55085511 55088526 PCT