Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1918 ATGGGAACCGCTTGGAGAAGAGCCTTTTGCACCAGCGACCCAGAATCCACAATACACTCCAAACACACAACCCAAAGCCCCACTCCTTCCATCGGAAGCTGCGTCAGATTCAGCTTCCTCTCCTCACCGTCGCTGCACCACCACCCTCCATCTTCTCCGCTCTCCCTCCTCAAAACCACCTTCAAATTCAGAAGTAATTGCGGAATCTGTTCGAATAGCATGAAGAGGGGACAGGGAACGGCCATTTACACTGCAGAGTGTGGTCACGCGTTTCATTTCCCATGCGTCGTTTCCCATGCACGCTCCCACGTCTGCCCCGTCTGCAATGCCACGTGGAACGACGTCCCGCTCCAGCAAAACGACGCCGTCCTTCGCACAGTTCGAACCCCAGACCAGAAACAACTCGCTCCTCTTTCCTCCCATTCGGAAGCTTCCTACGACGACGACGAGCCTCTTCCTTCTTCTTTCACGTGCTCCACGCAAATCCTTCCAATTCCCGAAGCCGATGAAAGCACGCACGAGGATCAAGAAGAAAACGATGACATATCAGAGTTCCCTGGATTTTTCGTCCGTCCAAATCCGCAATCCTCTTTACGACACAACGCTGAGTCAAAAACCGTTCGAGTCAAGCTCATGCCGGAGTGCGCAGTCATATCAGCTTCGCAAAGCTTCGAAACTCGTGCTGTGGTTTTACGAGTCAAGGCTCCATCGCCGTCTCCGCCGCTGCGGCGACGTCCTCCTATGGATCTCGTAGCGGTGCTTGACGTTAGCAACAGTATGGACGGAGTGAAGCTTCACGTGTTAAAGCGCGTGATGCGATTGATTGTATCCTCTCTTGGGGCGGCTGACCGGCTTGCCGTCGTGGCTTCATCGGGTGACTCGAAGCGGTTGTTACCTCTGCGTAGAATGACGGCTCAGGGACAACGCACGGCTCGGCGCGTGGTGGATCGGGTCCAGTGTGGCCAAGGATACAGCGGTGAAGAAGTGATAAAGAAAGCCGGGAAGGTTCTGGAAGATCGCAGAGAGAAAAACCCTCTAGCGAGGATTTTGCTTCTATCGGACGGTAATGACAACAGCAAGAACAGCAATCAATGGAGATGCTTGAGCTACGTGTCCTCTATCCGGTTGGATAGTGTCGAAGTTCCGGTTCATGCGTTTGGGTTCGACATAAAAAAGACCGGTTTAACACCGGAACCTTTTGAGGATGATTTTATCGAATACGTTAACAGAACATTCAGTGTGGCGGTGCAGGATTTGAGAATTCAGCTTGGCTTCTCGGCGCCGGCTGAAATTCGAGCGGTTTATTCATGCAGCGGGGGACCCACCGCGCTCAGCGCAAACGCGGCACGGCTTGGTGATTTATACGGCGAAGAAGAGAAGGAGTTGTTGGTGGAGATTAGAGTGCCAACGTCAGCTTTGCGGAACCACCACGTGATGACAGTGCGGTGTGTCAACAAAGACACAGCGTCTAAAAAATTCGTGTACGGTGCAGAACACACGTTTACAGTGGTGCCGCCTAAGAATTCTTCACTCTGCAGCGGCAGGGTTGAGCGGCTGAGGAACGTGTTTATAACGAGCCGAGCAGTAGCCGAGTCACGGAGGCTGGAGAAACATAACGAGTTTTTGAGCGCTCATCATTTGCTCGCTTCGGCTCGCGCGCTTCTAGAGAAGTTCGGCTCGGCTGGGGATTACGTGCGCGGCTTAGACGCCGAACTTGCGGAGCTTCAGTGGAGGAGACACCAGCGGGAGACGGTGGCGACAGGGCGGAGTAGAGAGAGCGAGAGGGAAGTAAGGTTGGTGGATGATGGCGGCGAAGAGTTGACGCCGACATCGGCTTGGAGAGCCGCTGAGAAGCTGGCTAAAATGGCCAGGATGAAGAAGTCGTTGAATAAAGTTAGCGACTTGCACGGCTTCGAGAATGCTAGGTTTTAA 1932 0.5357 MGTAWRRAFCTSDPESTIHSKHTTQSPTPSIGSCVRFSFLSSPSLHHHPPSSPLSLLKTTFKFRSNCGICSNSMKRGQGTAIYTAECGHAFHFPCVVSHARSHVCPVCNATWNDVPLQQNDAVLRTVRTPDQKQLAPLSSHSEASYDDDEPLPSSFTCSTQILPIPEADESTHEDQEENDDISEFPGFFVRPNPQSSLRHNAESKTVRVKLMPECAVISASQSFETRAVVLRVKAPSPSPPLRRRPPMDLVAVLDVSNSMDGVKLHVLKRVMRLIVSSLGAADRLAVVASSGDSKRLLPLRRMTAQGQRTARRVVDRVQCGQGYSGEEVIKKAGKVLEDRREKNPLARILLLSDGNDNSKNSNQWRCLSYVSSIRLDSVEVPVHAFGFDIKKTGLTPEPFEDDFIEYVNRTFSVAVQDLRIQLGFSAPAEIRAVYSCSGGPTALSANAARLGDLYGEEEKELLVEIRVPTSALRNHHVMTVRCVNKDTASKKFVYGAEHTFTVVPPKNSSLCSGRVERLRNVFITSRAVAESRRLEKHNEFLSAHHLLASARALLEKFGSAGDYVRGLDAELAELQWRRHQRETVATGRSRESEREVRLVDDGGEELTPTSAWRAAEKLAKMARMKKSLNKVSDLHGFENARF* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1918 643 MobiDBLite consensus disorder prediction 130 152 - -
Pvu8g1918 643 SMART VWA_4 247 457 IPR002035 -
Pvu8g1918 643 SUPERFAMILY RING/U-box 66 121 - -
Pvu8g1918 643 CDD RING-H2 67 109 - -
Pvu8g1918 643 SUPERFAMILY vWA-like 246 389 IPR036465 -
Pvu8g1918 643 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 49 643 - -
Pvu8g1918 643 Gene3D von Willebrand factor, type A domain 249 399 IPR036465 -
Pvu8g1918 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 146 IPR013083 -
Pvu8g1918 643 SMART ring_2 67 108 IPR001841 -
Pvu8g1918 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Pvu8g1918 643 ProSiteProfiles VWFA domain profile. 249 387 IPR002035 -
Pvu8g1918 643 MobiDBLite consensus disorder prediction 169 197 - -
Pvu8g1918 643 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Pvu8g1918 643 Pfam RING-like zinc finger 66 96 IPR001841 -
Pvu8g1918 643 Pfam von Willebrand factor type A domain 250 356 IPR002035 -
Pvu8g1918 643 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 49 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1918 Pvu-Chr8 48762945 48765187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1918 - - gmx:100819417 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1918 8 48762945 48765187 Pvu8g1918 8 48762945 48765187 ECH