Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1897 ATGGGTTGGGAAGAAGCATTTTACACTCTCTTAACCAACTCATTCACCCTCCTTTCATGGCCTCCGTTTAGCTTTCTTTGTCCATTGTTTGTTTCTGTTCGTGCAATGGAGAGTGACTCCCGTTCCAGCAACCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTCAATGATCATGGAAAGGGAACTTTCAGTGTTATTGAACTGCCCCCCATGGTGGCCTCATCTGAAATCCATAGCAACTATCTTGCTGTTGATACCTTATGTTGGTGCAGCACCATGTGTGTACAAATTCTTAATTAGACCATACTGTCCTTGGAGGCTATTTACAAAGACATCAAACATCTTCAGTGAGAAGGGCACACATGTCGAATCAGATGAGGATGGTAAACTCTTTGATGTCTCTGACCAGACAATTACGACAAGCCAAATACAGGGAAAGGAACTTGTCGATTTCTCTGATCAGACAATTACGCCAAGTCAAATACAAGAAAAAAAACTTGAAGCATATCAGGATGATAGTGCAGGTTGTGACATGACTGGAAGCAGTTATACAAGACTAACTAGTAAAAAGCTAGTCCAGAAGGAATGGAGCTGTGCTTTGTGTCAGGTTAGTACTACCAGTGAAAATTGCTTAAGGGAACATCTCAAAGGGAAGAAACACAAGGATAAGGAAAAAGAGCTTAGAGTAGAGTGCCATGAAACAAATAGCACGTACCTGTTATCCTCTACTCAGAAAAGAATCAAAGGGATGGTTCTAATAAGGAATCTCAACAAAATTGCTAACATTCTCAATCCAGTTTCCAGATCCGTAAGATGGTGTGAATGGACAAAGCCAGAGTTTGGATGGACAAAATTAAATACTGATGGTTCTATTAATAGAGACGTTGCCAGTTTTGGAGGGCTGCTTCGTGATTATAGGGGCGAACCAATGTGTGGTTTCGTCTCTAAAGTTCCTCAAGGAGATGTTTTCTTGGTTGAGCTGTGGGCCATTTGGAGAGGCCTTGTTCTTTGCGGGGGCCTTGGGATTAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAAGACAGTTAATAGAAAACAACATTGTCCAAAAGCTTATGGCTATTTGAAACAAATCTGGAAACTATTAAAGAAGTTTGATAAATATCAAATTTCTCACTCATGGCGTGAAACTAATAGAGCAGCAGATCATCTTTCTAAGATGGTTGTTTGGGGAAACGATGTGGTTTTGTGGCCTGTTGATTTTCCACCTACCCTTTGCAGTATCATTAAAGATGATGCCAGAGGAATGAAATACCTCAGACGATGA 1320 0.4106 MGWEEAFYTLLTNSFTLLSWPPFSFLCPLFVSVRAMESDSRSSNQRCLAFWVLFSLSMIMERELSVLLNCPPWWPHLKSIATILLLIPYVGAAPCVYKFLIRPYCPWRLFTKTSNIFSEKGTHVESDEDGKLFDVSDQTITTSQIQGKELVDFSDQTITPSQIQEKKLEAYQDDSAGCDMTGSSYTRLTSKKLVQKEWSCALCQVSTTSENCLREHLKGKKHKDKEKELRVECHETNSTYLLSSTQKRIKGMVLIRNLNKIANILNPVSRSVRWCEWTKPEFGWTKLNTDGSINRDVASFGGLLRDYRGEPMCGFVSKVPQGDVFLVELWAIWRGLVLCGGLGIKAIWVESDSMSVVKTVNRKQHCPKAYGYLKQIWKLLKKFDKYQISHSWRETNRAADHLSKMVVWGNDVVLWPVDFPPTLCSIIKDDARGMKYLRR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1897 439 Gene3D - 284 407 IPR036397 GO:0003676
Pvu8g1897 439 Gene3D Classic Zinc Finger 177 228 - -
Pvu8g1897 439 Pfam Reverse transcriptase-like 288 405 IPR002156 GO:0003676|GO:0004523
Pvu8g1897 439 CDD RNase_H_like 287 404 IPR044730 -
Pvu8g1897 439 Pfam Zinc-finger of C2H2 type 198 222 - -
Pvu8g1897 439 SUPERFAMILY Ribonuclease H-like 284 413 IPR012337 -
Pvu8g1897 439 PANTHER HVA22-LIKE PROTEINS 3 439 IPR004345 -
Pvu8g1897 439 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
Pvu8g1897 439 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 3 439 - -
Pvu8g1897 439 SUPERFAMILY beta-beta-alpha zinc fingers 191 232 IPR036236 -
Pvu8g1897 439 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1897 Pvu-Chr8 48382017 48385159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1897 276 404 Glycoside Hydrolase AT2G33160 26.515 9.07e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1897 - - gmx:102661917 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1897 8 48382017 48385159 Pvu8g1897 8 48382017 48385159 ECH