Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1893 ATGGATAAAACGAAAGAGAACTGGGCGTCGAACGACATCGTTTTGCAGGTGGGGATGGTCGTGCTCATGCTCCTCTTCTACCTCTTCATGCACAACGTCCCCAAGAAGCTGTGGTCAGAGCTCCGTCTCCGCAACCGCGCCGACATCCAAGCCAAGCGCCACTTCGTCCAGGGGGCCCAGCTCCTGGCCCGAGCCCGTGCCTCCAAGTCCAAGGCCCTTGCCAAAGAAGCCCAGGCCCAGGCCCAACGCGCCATCGCCCTCGACCCCCGCGACGCCGCCCCCCACCTCCTCAAAGCCCTCGCCCTCGACTTCCTTGGATTCCGCTCCGCCGCCCTCGATTCCCTCGACGACGCCCTCTCCCCCCTCGCCGCCACCTCCCTCTCCAACTCCGAGCGCGCCGACGCCCTCCTCAAGCGCGCCGAGCTCAGACTCGCCTCCACTCAGCGCGCCCGAGTCGACTCGGCCTTAGCGGATCTTTCCGAGTCCGTCAAACTCAGCCCCAACAACTCCAAGGCCTTCTTCGCCCTGGGAGAGTGCTTCGAGCGGAAGAAGATGAACGACGCCGCCGTTGAGGCCTATCAGCAGGCTCTCGAATTGGAACCCCAATCGCAGGTCGCTCAACAAGCCCTACGCAGGTTGGATTCTTCGCCCCAAACCAATTGA 663 0.635 MDKTKENWASNDIVLQVGMVVLMLLFYLFMHNVPKKLWSELRLRNRADIQAKRHFVQGAQLLARARASKSKALAKEAQAQAQRAIALDPRDAAPHLLKALALDFLGFRSAALDSLDDALSPLAATSLSNSERADALLKRAELRLASTQRARVDSALADLSESVKLSPNNSKAFFALGECFERKKMNDAAVEAYQQALELEPQSQVAQQALRRLDSSPQTN* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1893 220 SUPERFAMILY TPR-like 68 204 IPR011990 GO:0005515
Pvu8g1893 220 ProSiteProfiles TPR repeat region circular profile. 170 202 - -
Pvu8g1893 220 Gene3D Tetratricopeptide repeat domain 41 213 IPR011990 GO:0005515
Pvu8g1893 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 11 213 - -
Pvu8g1893 220 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Pvu8g1893 220 Coils Coil 130 150 - -
Pvu8g1893 220 PANTHER - 11 213 - -
Pvu8g1893 220 Pfam Tetratricopeptide repeat 171 202 IPR001440 GO:0005515
Pvu8g1893 220 SMART tpr_5 170 203 IPR019734 GO:0005515
Pvu8g1893 220 SMART tpr_5 58 91 IPR019734 GO:0005515
Pvu8g1893 220 SMART tpr_5 133 169 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1893 Pvu-Chr8 48218934 48220368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1893 - - vra:106778937 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1893 8 48218934 48220368 Pvu8g1893 8 48218934 48220368 ECH
Pvu8g1893 8 48218934 48220368 Pvu9g0372 9 7633880 7635020 PCT