Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1875 ATGCGTGTCACCATCGATCTAGGGTTTTGGAGCCTGGTCCCCGTCGCGGTGGTCTGCTTCGTCTTGCCGGCGATCGGCTTCGTGCTCCGTCGCAGATGTCGGCGCGCGGCGGCCAGGGCGGAGGAGATCAAGCGGCTACTTGTTCTCGCTGAGGAGGAGTCTGTTAGAGCCGAGACCGAGGCTTCGTATCACAAATACGGCGCCGTTTCGGTGCCTAAGGACAAAATATGCGCCGTGTGTTTCTGTCCCACCACTACACGTTGCGCGAGGTGCAAAGCGGTTCACTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGATGAATGCCATCCTGCCATCGCAACTTCCCAGAATGATGATTTGGTTAGAGATCTTGGAAAGAAGGTAGCAGATCCAGACTACCGTGGAATCCATGAACAGAGGTCTCAGACTGAAAGCACAGAATATGCAACATCATCTGAGAATCCCCTGTTGTCTGAAAAGAGCTGTTCTAATATTTCACAGGCAAAGGATGATAGTGCAAGAGACGATTCTCTTCAAGAGGGAAATGTTGCAGGCTCTAATTCTGAATTATCTAGTAATTCGTTCTCTGGATTCTCAGCTTCGACTGGTGCCAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGAGAGATCCGAGGGACATATTTTTGTGGATCATGACACTTCTGATACCACTTCAAGTTATAACAACATTGATGAATCCATTCCATTATCACCTAAGTTTGTTGGTTTGGTCGATTCGGTTGATGATTATCCAGCAATGCATAAATTATATCAAGTTACACCTGGTTTGGGCAAAGAAGAGAGTAAGCTCACATCATCAGATGGTAGTTTTGGTTTGCGTATGCGAAAAGGGGCAACAATTGAGCCTTCCACAGTGTCTTCTGGATTCTGGGACAAAACTCTTGATTCAAAAAGGTTAAAAGATGACTCTAATAGTGACCATCTTCCATCCCAAGGTGATTCTCTTCCAAAGTCAGTTGAGAACAATATGCCACGTGCAGGATCATCATCTTCAGAGAAATATGTTGTTGATTCTTCAGATTGTGCTGATGCTGTGAGCATCCATAATTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAACCCAGGTAGCACCTTGGAGTTAGCTGGAAGTAGAGATCTGCCACATGCATTTGCTGATACTAAGTTAGTTTCTAGAACGGAAGAACATTCACATTATAGTACAAAATATAGGAATAATGGCATCCAATCTGGCACTGTTACTTCATCTCGGGTTGTTAGCTCTCCAAAGTCTAAGAATGACCTGAAAACATCTGTTCTGAAAGCTTCTGATCAGTTTAGAGGGTCAAAATCATCTAAACCCTTTCCATTAGCTGTTGGGAGTAATATTACTGGAAAATACAGTGACAAGGGTCATTTTCCATATGATTTGTTTGTCAAGCTTTTTAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCTTTTACGCCGCCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGAAAATAAAAAGTGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTCCCATCTCACCTGAGGGCATACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAGTTTCTAAGGCTTGCTGTTGAGACAATGCAATCTGTTTGCCTTATGGATTCAGGGGATAATAAATCAGACTCGTTAAAAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGTTATCTTCAATCAAAGATAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTGAAGAAAGGATGATGGATCTAACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAACTGCTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGCAAGTCTTACGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTAAGTCAGGAAAATTTGGCAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTTATGAGTGGAACTAGTGATTTGGCTATATACAGGCTATATGGGGTAGTTGTGCACCTGGATACAATGAATGATGCTTTTTCGGGTCACTATGTATGCTATGTGAAGAATTTTCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGGTGACATCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTTTATGCAAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGGACAGTATAGTATATTCTGATTCAAAATGGAAACTAAATGGAAAAAGTGCCATAATGAAGAGACGACTATCTACAGTTTCTGGTGCTAGAGTTAATTTGACTTCTGCCGATGGTTCACCCTCCTTAGATGATGCTATCTATTCAAAGTTTCTCCACCAGAGAAGGATTTTGGAAGAAGATTTATCAAGCGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCCTGCAGTACAGATTGCACTAGTGATTCAACCAGTACAGATGACTTTGCTGATTATATTTTTGGTGATTTAGGACGCAGCTCAGGTGGCATGTTAAGAAATTCAGATTCGAACATTTCCCCTGCATTGTCGTCTTCTCCCCACTCTAGATATTTTCCCTCTTCTGATATAGACCCACATGATTCCGTTTTGCTACATCCAACTGGGTTCCAACCACCCCTTCCCCAGGTTAAAAGGTGGAGATAA 2934 0.4233 MRVTIDLGFWSLVPVAVVCFVLPAIGFVLRRRCRRAAARAEEIKRLLVLAEEESVRAETEASYHKYGAVSVPKDKICAVCFCPTTTRCARCKAVHYCSGKCQIVHWRQGHKDECHPAIATSQNDDLVRDLGKKVADPDYRGIHEQRSQTESTEYATSSENPLLSEKSCSNISQAKDDSARDDSLQEGNVAGSNSELSSNSFSGFSASTGASESSDDSSVCESIISNEHERSEGHIFVDHDTSDTTSSYNNIDESIPLSPKFVGLVDSVDDYPAMHKLYQVTPGLGKEESKLTSSDGSFGLRMRKGATIEPSTVSSGFWDKTLDSKRLKDDSNSDHLPSQGDSLPKSVENNMPRAGSSSSEKYVVDSSDCADAVSIHNLQTVGSRVSNHVINPGSTLELAGSRDLPHAFADTKLVSRTEEHSHYSTKYRNNGIQSGTVTSSRVVSSPKSKNDLKTSVLKASDQFRGSKSSKPFPLAVGSNITGKYSDKGHFPYDLFVKLFNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCENKKWCFTCEFESLILKSKDTKSPISPEGILSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDNKSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSEREERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYHCVRCKSYEKAKKKMTVLEAPNVLTIALKRFKSGKFGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNDAFSGHYVCYVKNFQSRWFKVDDSVVTSVELESVLAKGAYMLFYARCSPRAPRLIRDSIVYSDSKWKLNGKSAIMKRRLSTVSGARVNLTSADGSPSLDDAIYSKFLHQRRILEEDLSSDNSSLISSNSDEGSCSTDCTSDSTSTDDFADYIFGDLGRSSGGMLRNSDSNISPALSSSPHSRYFPSSDIDPHDSVLLHPTGFQPPLPQVKRWR* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1875 977 MobiDBLite consensus disorder prediction 336 361 - -
Pvu8g1875 977 MobiDBLite consensus disorder prediction 137 220 - -
Pvu8g1875 977 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 971 - -
Pvu8g1875 977 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 508 523 IPR018200 GO:0004843|GO:0006511
Pvu8g1875 977 MobiDBLite consensus disorder prediction 148 174 - -
Pvu8g1875 977 MobiDBLite consensus disorder prediction 928 948 - -
Pvu8g1875 977 SUPERFAMILY HIT/MYND zinc finger-like 74 117 - -
Pvu8g1875 977 Pfam Ubiquitin carboxyl-terminal hydrolase 507 808 IPR001394 GO:0004843|GO:0016579
Pvu8g1875 977 MobiDBLite consensus disorder prediction 185 220 - -
Pvu8g1875 977 MobiDBLite consensus disorder prediction 324 361 - -
Pvu8g1875 977 Pfam MYND finger 77 114 IPR002893 -
Pvu8g1875 977 Gene3D Cysteine proteinases 500 820 - -
Pvu8g1875 977 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Pvu8g1875 977 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 507 811 IPR028889 -
Pvu8g1875 977 MobiDBLite consensus disorder prediction 884 906 - -
Pvu8g1875 977 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Pvu8g1875 977 SUPERFAMILY Cysteine proteinases 503 814 IPR038765 -
Pvu8g1875 977 Gene3D - 67 120 - -
Pvu8g1875 977 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 971 - -
Pvu8g1875 977 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1875 Pvu-Chr8 47818438 47826430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1875 490 815 Miscellaneous Gene Families AT4G31670 51.212 2.34e-115 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1875 K11855 - gmx:100782303 1404.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1875 8 47818438 47826430 Pvu8g1875 8 47818438 47826430 ECH