LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g1717	ATGAGGACCGTGGTTGAAGGATCCTTGGTCGAGAGGTCGGACGACGCTGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACCCTTCCTCCACTTCAGCATCTGAAGCGAACGAGGCCCAGGGCATGTTGCCAGATTCAGGGAAAATTGAAACACCTACACATGTATCCACATCCTTGGAGGGTTCACTGAAGCAGGTCAATGTGGGTTCTCCTAATGAGCAAGGATTATCCAATGCATTTAATGTCGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCAAGTGGAATCTTGTGATTTGCGAATTGTGCCTATCTATGGCGGAGGAGTTAATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGGTCGGCGGGAATTAGTAAAAACAAGGACTCAGTCCCTTGTGGTCCAATTCGGATTTGTGGCCAGAAAAGTTATTTTAGTCCACACTTGTCTTTAGAGGTTGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACTGACGTTCTGATTAATGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTGTGGACAAAAATGAAAGGGCCAAATGTGTCTTGTAACAACACTTCAACACCGGAAGGTTGCAACCTTTTTACAGAAGATAATGAAGTGGATAGTAAAGGGAAACATAAGGTAGATGCTGATCATGGGTCTGCCCATTACAGAAGCTATCCTGTTCAAAACAAGGAGGATGCTGTTCAAAACTCCATATCCTATAGAAATGATTCTTTGACTGGAAAAAGAATTGTCTGCGAGGATAATACCTCCCAGGTTTCTACTAACCATTTAGATCTACTTGGAATAGCCAACCGGGACAGCATTAATGGACATCACTATGCTACTCCTGATTCCTTAAGGAACAATTCTTGTAGTGGACAAAGTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGTCCCTTCTAAAAGACCAACTGGCAGGGTGGTCTCTATTATTGAGAGATCGCCTCGTCGGGAGGGTATTGTCGGTCATCTTAATGTGAAGCAGTGGGCTTGTTACAAGGACATAACCAAAAAGGACGTCAAGAAGAATAATAATTTGGTTTCTGATAATGATTACATCCAGATGATACCAACTGATCCAAAGTTTCCTAATATGATGCTTCTTGTTAGAAAATTACCCAAGTGCATTATGCAAAGGTTGAAAAGTGGTGACATGACAATTGAAAAGGATCTGGTAGCTGCACAAATTGTTGGTTGGGTTGAGGAAAATCCTTTTCCCGAGGCTCACATCTTGTGTGTATTTGGAAAAGGTGATGAAATTCAGACCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTCGTCTGAATTTTCTCCTGAAGCTCTGTCCTGTCTTCCGTGTGTTCCTTGGGAGGTACCACTGAAGGAAATTCAAAGTAGAATAGATCTCAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCAATTGAGAAGTTACCTAATGGAAATTATAGAGTAGGTGTTCACATTGCTGATGTATCATATTTTGTTTTACCTAACACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACATCTGTCTATATGTTGCAAAGGAAGTTACCTATGTTGCCTGCATTATTATCAGAGAATATTGGTTCACTTAGTCCTGGAGTGGATCGACTTGCTGTTTCTATACTCCTGGATGTAAATCATGTGGGGGATGTTGTAGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCTCAGGACATCATTGACCAGGATTTTGATTTTGAAGGTTTAAACAATACTGAAGATGGCTATCCCAGAGTGTACGGAAATTTTGAATGGTCCGATGTTATTATGTCTTTGAAGAGTCTTTATGAAATTTCGAATGTCTTGAAACGCAAGAGGTTTACTGATGGGGCTCTACGGCTTGAAAACCCAAAAGTTGTTATCTTGTTTGATGAAAATGGAGTTCCTTATGATAGTATGCTTTCTGAAAGGAAAGATTCAAATTTTCTTGTTGAGGAATTTATGCTTTTGGCCAATAGAGTTGCTGCTGAAGTCATATGCAGAGCTTATCCTGATGCTGCATTGTTAAGGAGGCATCCTGAACCTAATATGCGAAAGCTGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTTGAATTGAACACGACTTCCTCTGGTCAATTCCATTGTTCACTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTACATACTTATTTCTTATGCTACTCGGCCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTAAAAGATAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTTACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACCGGACATTGCTTGCTACCATAGAGGCTGAGGATTTGTATGCGAAGCAGGTTTATAAGGAAATAGATGTGGAGAAAAGATGTTTCACAGGTATCAATTTTGATAAGAGTGCTGCAGCATCCATCAAAGGCAGGGAAGCACTATCAGTTGCAGCTGTGAAGTATATTGTTCCAGGTGCTGAAGCACTTGCAAAAATTGCTGCTCATTGCAACGAGAGAAAGCTAGCTAGCAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTAAAGAAAAAGGAGGTCTTATTTTCAGAAGCTAGAATTCTGGGACTAGGCCCGAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTTGAAGGCTTGACTGCAGAATGGCTTGAAACAACATCCACATTGGTGCTTAGCATGTCTACTAATACGTGTACATTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCGTATAACCAGAGTGATGTAATAAAAAAAGTGGATGGTAATAAAGCGGAAACTGAAATTGATCCCTCAGTTTTTCCTCTCACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGGCTGTATATGAGCTCCTATTTTTATGGGATCAAGTGTTGA	3327	0.4109	MRTVVEGSLVERSDDAEKEKKKKRRSNRRSKQNPSSTSASEANEAQGMLPDSGKIETPTHVSTSLEGSLKQVNVGSPNEQGLSNAFNVAFTSMPPMHINEQVESCDLRIVPIYGGGVNSKSFSEPAGCRGSAGISKNKDSVPCGPIRICGQKSYFSPHLSLEVVEKALEKGDVFKALFHVNAHNRVEAYCKIDGVPTDVLINGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNVSCNNTSTPEGCNLFTEDNEVDSKGKHKVDADHGSAHYRSYPVQNKEDAVQNSISYRNDSLTGKRIVCEDNTSQVSTNHLDLLGIANRDSINGHHYATPDSLRNNSCSGQSEVVNAVEKMCLLVNSVPSKRPTGRVVSIIERSPRREGIVGHLNVKQWACYKDITKKDVKKNNNLVSDNDYIQMIPTDPKFPNMMLLVRKLPKCIMQRLKSGDMTIEKDLVAAQIVGWVEENPFPEAHILCVFGKGDEIQTQLDAILFQNAICSSEFSPEALSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPNTALDSEAQSRSTSVYMLQRKLPMLPALLSENIGSLSPGVDRLAVSILLDVNHVGDVVDRWIGRSVIHSCCKLSYDHAQDIIDQDFDFEGLNNTEDGYPRVYGNFEWSDVIMSLKSLYEISNVLKRKRFTDGALRLENPKVVILFDENGVPYDSMLSERKDSNFLVEEFMLLANRVAAEVICRAYPDAALLRRHPEPNMRKLREFMAFCQKHGFELNTTSSGQFHCSLEQIREKLKGDPVLYYILISYATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYAKQVYKEIDVEKRCFTGINFDKSAAASIKGREALSVAAVKYIVPGAEALAKIAAHCNERKLASRNVKDACDKLYIWFLLKKKEVLFSEARILGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLSMSTNTCTFRRGWSNKWRAIEEVALLSCPYNQSDVIKKVDGNKAETEIDPSVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFYGIKC*	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g1717	1108	PANTHER	DIS3-LIKE EXONUCLEASE 2	20	1102	-	-
	Pvu8g1717	1108	Coils	Coil	13	33	-	-
	Pvu8g1717	1108	Gene3D	-	398	480	-	-
	Pvu8g1717	1108	SMART	RNB_2	523	877	IPR001900	GO:0003723\|GO:0004540
	Pvu8g1717	1108	Pfam	RNB domain	523	875	IPR001900	GO:0003723\|GO:0004540
	Pvu8g1717	1108	SUPERFAMILY	Nucleic acid-binding proteins	366	495	IPR012340	-
	Pvu8g1717	1108	SUPERFAMILY	Nucleic acid-binding proteins	484	962	IPR012340	-
	Pvu8g1717	1108	PANTHER	RIBONUCLEASE	20	1102	-	-
	Pvu8g1717	1108	MobiDBLite	consensus disorder prediction	31	45	-	-
	Pvu8g1717	1108	Hamap	DIS3-like exonuclease 2 [DIS3L2].	18	1079	IPR028591	GO:0000175\|GO:0034427
	Pvu8g1717	1108	MobiDBLite	consensus disorder prediction	7	21	-	-
	Pvu8g1717	1108	Pfam	Dis3-like cold-shock domain 2 (CSD2)	414	493	IPR041505	-
	Pvu8g1717	1108	MobiDBLite	consensus disorder prediction	1	64	-	-
	Pvu8g1717	1108	Gene3D	-	149	245	-	-
	Pvu8g1717	1108	ProSitePatterns	Ribonuclease II family signature.	844	868	IPR022966	-
	Pvu8g1717	1108	SUPERFAMILY	Nucleic acid-binding proteins	152	375	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g1717	Pvu-Chr8	42759101	42765579	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g1717	K18758		-	gmx:100817387	1774.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g1717	8	42759101	42765579	Pvu8g1717	8	42759101	42765579	ECH