Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0887 ATGGCCTCCACCAACAACTTACATGGAACAAGTGATGCCAAGCAGGAATTGCCTAACGCAAATACCAAAGTTTTAAATCGTTTTCATGAACAAAGACGCCGTGCAATAAAGTGGCCAACACTAACAACGAAGCAGAACAACAACCCTATATCACAGTCTCCACGGGTCTATATAAACACCACAATGCATCATCACTTGTACACACCAGCTGCAAATTGTAGTGGCATCTTTACCTTTTGTCTCCGAACTAGTTCACTTGAGAGATATATAATATTTCTATTTCCAAATATGGCAAGCTTGAAGGTTGCATGCATGGTTGTGCTGTGCATGGGTGTGGTGGGTGCACCAATGATGGCGCAGGCCATTTCATGCGGCGATGTGACAACGGACTTGGCACCGTGCCTGTCTTACCTGATGAATGGTGGAACGGCTTCAGATGCGTGCTGTGAAGGAGTTAGGAGCATTCTGGGTGCTGCTGGAACAACCTCTGAAAAACAAACCGTGTGTAACTGTCTTAAGGATGCTGCTAATAACTTTGGCATCAATGATAACTACGCTCAGGCACTCCCTGGTCTCTGCAATGTCAGCGTCCCTTACAAGATCAGCCGCTCCACCAACTGTGCAAACATCAGGTTCTAA 639 0.4601 MASTNNLHGTSDAKQELPNANTKVLNRFHEQRRRAIKWPTLTTKQNNNPISQSPRVYINTTMHHHLYTPAANCSGIFTFCLRTSSLERYIIFLFPNMASLKVACMVVLCMGVVGAPMMAQAISCGDVTTDLAPCLSYLMNGGTASDACCEGVRSILGAAGTTSEKQTVCNCLKDAANNFGINDNYAQALPGLCNVSVPYKISRSTNCANIRF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0887 212 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 122 209 IPR036312 -
Pvu8g0887 212 ProSitePatterns Plant lipid transfer proteins signature. 189 210 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g0887 212 PANTHER - 97 209 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 SMART aai_6 124 207 IPR016140 -
Pvu8g0887 212 Pfam Protease inhibitor/seed storage/LTP family 124 207 IPR016140 -
Pvu8g0887 212 PRINTS Plant phospholipid transfer protein signature 123 139 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 PRINTS Plant phospholipid transfer protein signature 143 157 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 PRINTS Plant phospholipid transfer protein signature 164 179 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 PRINTS Plant phospholipid transfer protein signature 180 197 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 PRINTS Plant phospholipid transfer protein signature 198 209 IPR000528 GO:0006869|GO:0008289
Pvu8g0887 212 CDD nsLTP1 122 207 - -
Pvu8g0887 212 Gene3D - 121 212 IPR036312 -
Pvu8g0887 212 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 97 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0887 Pvu-Chr8 8669034 8670406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0887 100 211 Acyl Lipid Metabolism Gene Families AT2G38540 42.105 2.39e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0887 - - pvu:PHAVU_008G087100g 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0887 8 8669034 8670406 Pvu10g0691 10 15073965 15075561 PCT