Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0481 GACACGAACCATGACCAAATACAAATACGTCACCGTATTTGTCACGTTTCCACGCGATTTTCATTCAAAAGAAAAGAAGCACAAATAAGCGACGCCAGCGAGGTTGCATTTAGATTTCGATTCCTTCGTGCTTCCGATTCTTCTGAAACTCCAGGTGAAGCTTCCACCCAGGACCTATCTCCGGCGGCATCTCCCCGATCTCCGGTGAATCTCCGGTCCTCATTTTCTTCCCTCGAAATGAATCCCGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGTAAATCATGTCTTCTTCTGAGATTTGCAGATGATTCATACATAGAGAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACAGTTGAGCAGGATGGAAAGACCATCAAACTCCAGATCTGGGACACAGCTGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTACCGTGGAGCCCATGGGATCATTATTGTTTATGATGTGACAGATGAAGAGAGTTTCAATAATGTGAAGCAGTGGCTCAGTGAAATTGACCGCTATGCAAGTGATAGTGTTAACAAGCTTTTGGTTGGCAACAAGTGCGATCTGACAGAAAATAGAGCTGTGTCATATGATACAGCTAAAGCATTTGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAAGATGCTACAAACGTTGAACAAGCTTTCATGGCAATGGCTGCTTCAATCAAGAATAGAATGGCAAGCCAACCTGCAAATAATGCAAGGCCTCCAACAGTCCAGATCAGGGGACAACCAGTTGCACAGAAAGGTGGATGCTGCTCTTCCTAA 846 0.4362 DTNHDQIQIRHRICHVSTRFSFKRKEAQISDASEVAFRFRFLRASDSSETPGEASTQDLSPAASPRSPVNLRSSFSSLEMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDSVNKLLVGNKCDLTENRAVSYDTAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPANNARPPTVQIRGQPVAQKGGCCSS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0481 281 MobiDBLite consensus disorder prediction 47 68 - -
Pvu8g0481 281 SMART arf_sub_2 71 256 - -
Pvu8g0481 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 257 IPR027417 -
Pvu8g0481 281 SMART rho_sub_3 90 250 IPR001806 GO:0003924|GO:0005525
Pvu8g0481 281 TIGRFAM small_GTP: small GTP-binding protein domain 86 242 IPR005225 GO:0005525
Pvu8g0481 281 SMART rab_sub_5 88 251 - -
Pvu8g0481 281 SMART ran_sub_2 93 280 - -
Pvu8g0481 281 PANTHER LD21953P-RELATED 62 280 - -
Pvu8g0481 281 PRINTS Transforming protein P21 ras signature 88 109 - -
Pvu8g0481 281 PRINTS Transforming protein P21 ras signature 111 127 - -
Pvu8g0481 281 PRINTS Transforming protein P21 ras signature 129 151 - -
Pvu8g0481 281 PRINTS Transforming protein P21 ras signature 191 204 - -
Pvu8g0481 281 PRINTS Transforming protein P21 ras signature 226 248 - -
Pvu8g0481 281 ProSiteProfiles small GTPase Rho family profile. 81 253 - -
Pvu8g0481 281 ProSiteProfiles small GTPase Arf family profile. 81 248 - -
Pvu8g0481 281 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 62 280 - -
Pvu8g0481 281 ProSiteProfiles small GTPase Ras family profile. 76 281 IPR001806 GO:0003924|GO:0005525
Pvu8g0481 281 SMART ras_sub_4 85 251 - -
Pvu8g0481 281 CDD Rab1_Ypt1 86 251 - -
Pvu8g0481 281 Pfam Ras family 89 249 IPR001806 GO:0003924|GO:0005525
Pvu8g0481 281 ProSiteProfiles small GTPase Rab1 family profile. 83 281 - -
Pvu8g0481 281 Gene3D - 79 275 IPR027417 -
Pvu8g0481 281 MobiDBLite consensus disorder prediction 48 68 - -
Pvu8g0481 281 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0481 Pvu-Chr8 4172640 4176825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0481 K07874 - gmx:100813403 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0502 10 7505629 7509703 Pvu8g0481 8 4172640 4176825 PCT