LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0172	ATGGCCGCCACGCTCTATTCAACGCACTGTAATTCACTCGCCACCTCCTCCTCTTCCGCCTCCTTCCAACCCTGTCCCTTCTCCTCCAACCTCGCTTACCTTCAACGCGTCACCTTCTCGCAGCGCTTTCTCGCTTCCAAGGTCTCTCTCAAATCCCAACCCCATTCGTCTCAGATTCCTGTCCACACTCAGCAACAGGAAGGTACAGTAGCAGCTTCTGTGACTCCTGTTGAAAATGGCACTTCTCACAGGCAGCTGAAGACTGAATTATTGTCTGTTAAGTCCCCAAAGGAGTATCATGTTGAAGAAGGTTTTGAAAAGGATGAAAATGAGTCCACTGTTAGTATTACTGTTGTTGGAGCCTCTGGTGACCTTGCTAAGAAGAAGATATTTCCAGCTCTCTTTGCACTTTACTATGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTATGCACGGAGTAAGATGAGTGATGAAGATCTGAGAAAGATGGTTAGCAGGACCCTCACTTGTAGAATTGATAAGAGAGAGAACTGCCAAGAGAAGATGGACCAGTTTCTAGAAAGATGTTTCTACCATTCTGGTCAATATGATTCTGAGGAAAACTTTGCACTGCTAGACAAGAAGCTCAAGGAACAAGAGGGTGGGAGAACTTCCAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTTATAGAGGCTGTAAAATGTGCAAGCTTGTCAGCTTCTTCTGGTAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTCGGTCGTGACTCTGAATCTTCAGCTGCATTAACAAAATCACTCAAGCAGTATCTGGCAGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTCCTTCGATTCTCAAATCTCATATTTGAGCCATTATGGTCAAGGCAGTATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGACGTGGCGGGTACTTTGACCATTACGGTATCATAAGAGACATTATGCAAAATCATTTACTTCAAATACTAGCACTCTTTGCCATGGAAACCCCTGTTAGTTTGGATGCAGAGGATATAAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGCGACCCCTGCAACTTCAGGATGTGGTTATAGGCCAGTATAAGAGCCACACAAGAGGAGGTGTTACATATCCAGCCTATGTTGATGACAAAACTGTACCAGTAGGCAGCTTAACTCCAACATTTGCTGCAGCTGCCCTCTTTATAGATAATGCAAGATGGGATGGGGTACCTTTTCTGATGAAGGCAGGGAAAGCATTACAAAGCAAAGGAGCTGAGATACGGGTACAGTTCAGGCATGTGCCGGGTAATCTGTACAATCGGAATATTGGTACTGATCTTGATCGGGCTACCAATGAACTTGTTATTAGAGTTCAGCCTGATGAGGCTATTTATTTGAAGATAAACAACAAAGTTCCAGGTCTGGGAATGAAGTTGGACCGCAGTAATCTTAATCTTCACTATGCAGCAAGATATTCAAAGGAGATTCCAGATGCTTATGAAAGACTACTGTTGGATGCCATTGAAGGAGAAAGAAGACTCTTCATACGTAGTGATGAACTGGATGCGGCTTGGTCACTCTTTACCCCTGTACTGAAGGAACTAGAAGAGAAGAAGATAATTCCAGAGTACTATCCTTATGGTAGTAGAGGTCCTGTTGGTGCTCACTATCTTGCAGCCAGATACAACGTACGGTGGGGTGACCTTGGTTCAGACGTGGACCACTAA	1809	0.4356	MAATLYSTHCNSLATSSSSASFQPCPFSSNLAYLQRVTFSQRFLASKVSLKSQPHSSQIPVHTQQQEGTVAASVTPVENGTSHRQLKTELLSVKSPKEYHVEEGFEKDENESTVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMSDEDLRKMVSRTLTCRIDKRENCQEKMDQFLERCFYHSGQYDSEENFALLDKKLKEQEGGRTSNRLFYLSIPPNIFIEAVKCASLSASSGNGWTRVIVEKPFGRDSESSAALTKSLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLQDVVIGQYKSHTRGGVTYPAYVDDKTVPVGSLTPTFAAAALFIDNARWDGVPFLMKAGKALQSKGAEIRVQFRHVPGNLYNRNIGTDLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEEKKIIPEYYPYGSRGPVGAHYLAARYNVRWGDLGSDVDH*	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0172	602	TIGRFAM	zwf: glucose-6-phosphate dehydrogenase	114	594	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	Gene3D	-	110	284	-	-
	Pvu8g0172	602	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	286	593	-	-
	Pvu8g0172	602	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	112	299	IPR036291	-
	Pvu8g0172	602	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 2, CHLOROPLASTIC	33	599	-	-
	Pvu8g0172	602	Hamap	Glucose-6-phosphate 1-dehydrogenase [zwf].	113	595	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	Gene3D	Dihydrodipicolinate Reductase; domain 2	285	594	-	-
	Pvu8g0172	602	PRINTS	Glucose-6-phosphate dehydrogenase signature	252	265	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	PRINTS	Glucose-6-phosphate dehydrogenase signature	276	304	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	PRINTS	Glucose-6-phosphate dehydrogenase signature	328	345	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	PRINTS	Glucose-6-phosphate dehydrogenase signature	346	362	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	PRINTS	Glucose-6-phosphate dehydrogenase signature	433	459	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	33	599	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	Pfam	Glucose-6-phosphate dehydrogenase, C-terminal domain	299	593	IPR022675	GO:0004345\|GO:0006006\|GO:0050661
	Pvu8g0172	602	Pfam	Glucose-6-phosphate dehydrogenase, NAD binding domain	118	296	IPR022674	GO:0006006\|GO:0016614\|GO:0050661
	Pvu8g0172	602	ProSitePatterns	Glucose-6-phosphate dehydrogenase active site.	286	292	IPR019796	GO:0004345\|GO:0006006

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0172	Pvu-Chr8	1436783	1441474	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0172	K00036		-	gmx:100815891	1080.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g0172	8	1436783	1441474	Pvu8g0172	8	1436783	1441474	ECH
	Pvu8g0172	8	1436783	1441474	Pvu4g0531	4	5705339	5706271	PCT