Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1803 ATGGCAAATGCATGGACAGAAGATCAAATAGCTATATTCCACGAAGCCTTTGATGTTGTTGACAAGGATTCCGACGGTTTCATTACTGTGGAAGAACTGATATCCATTGTTCAGTCATTAGATGGGAACACGCCAAAGGAAGAAGTTCAGGAAAAGATTAGTAAAGTCGATATCGATGGAAAAGGAAGTGTAAATTTTGAAGAGTTCTTGAATGTTATCGGAATGACAATGAAGGAAAATCTGACTGAGGAGCTAAAAGACGCGTTCAAAGTATTTGACAGGGATAATGATGGGTACATATCAGCTACAGAGTTGAGACATGTGATGATGAAATTGGGAGAGAGGCTAACAGAAGAAGAAGTTGAACAAATGATTAGAGAAGCAGATTTGGATGGGGATGGTCGAGTTAGCTATGAAGAATTTGCAAGGTTTATGTCATTAAATTGA 447 0.3826 MANAWTEDQIAIFHEAFDVVDKDSDGFITVEELISIVQSLDGNTPKEEVQEKISKVDIDGKGSVNFEEFLNVIGMTMKENLTEELKDAFKVFDRDNDGYISATELRHVMMKLGERLTEEEVEQMIREADLDGDGRVSYEEFARFMSLN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1803 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Pvu7g1803 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Pvu7g1803 148 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 146 - -
Pvu7g1803 148 CDD EFh 84 146 IPR002048 GO:0005509
Pvu7g1803 148 Gene3D - 79 122 - -
Pvu7g1803 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Pvu7g1803 148 SMART efh_1 120 148 IPR002048 GO:0005509
Pvu7g1803 148 SMART efh_1 48 76 IPR002048 GO:0005509
Pvu7g1803 148 SMART efh_1 84 112 IPR002048 GO:0005509
Pvu7g1803 148 SMART efh_1 12 40 IPR002048 GO:0005509
Pvu7g1803 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Pvu7g1803 148 SUPERFAMILY EF-hand 4 146 IPR011992 -
Pvu7g1803 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Pvu7g1803 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Pvu7g1803 148 PRINTS Recoverin family signature 52 73 - -
Pvu7g1803 148 PRINTS Recoverin family signature 76 95 - -
Pvu7g1803 148 PRINTS Recoverin family signature 98 116 - -
Pvu7g1803 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Pvu7g1803 148 Pfam EF-hand domain pair 83 146 IPR002048 GO:0005509
Pvu7g1803 148 Pfam EF-hand domain pair 14 72 IPR002048 GO:0005509
Pvu7g1803 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Pvu7g1803 148 Gene3D - 123 148 - -
Pvu7g1803 148 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1803 Pvu-Chr7 41073402 41074222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1803 77 146 EF-hand Containing Proteins AT3G56800 43.243 1.47e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1803 K02183 K13448 gmx:100778454 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1612 1 41292521 41293336 Pvu7g1803 7 41073402 41074222 PCT