LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g0706	ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTCGCTCCCAAGGACAAACCTCCTTCTCCTTCTTCTCCCCGTCCCAACCCTCCCACTCCCACTCCCACTCCCAAAATCACTGCCACCGCCACATTCTCCCCTTCCAAACGCCGCCTAACGTCCCAAATCACACCCCCTCGCAAGCTCCAGAAGCTTCTCGAACCTTCTTCCTCTTCACTCCACCAACGCTTCCTCCACAAGTTTCTCGAACCTTCCTCCCCTCAGCACCCTCCTCTCCCTTCCTCTTCCAAACGCCTAACCTACACTCCCCTCGAACAGCAGGTTCTCCACCTCAGAGCCAAACACCCCGACGTTCTCCTTATGGTCGAGGTCGGTTACAGGTACCGTTTCTTCGCCCAAGACGCCGAACACGCCGCCAGAGTGTTAGGCATTTACGCGCATATGGATCACAATTTTTTAACCGCTAGCATACCGACGTTTCGACTGAATGTCCACGTCAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGTGTTGTCCGGCAGACCGAGACCGCCGCCATCAAGGCTCACGGCTCCAACCGCTCGGCGCCGTTTGGGCGCGGGCTGTCGGCGCTTTACACGAAGGCCACGCTCGAGGCGGCACCGGAGATTGGGGGAGAGGGGGACGGGTGTGGTGGAGAGAGTAATTACTTGCTGTGTGTGGTGGAGAAGAGTGTTGTGGGGGAGAAGGGGAATTGTGGTGTGGAGGGTGGTGGTGATGTGAGGGTTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTATGGGGAGTTTTGTGATAGTTTTCTGCGGAGTGCGCTTGAGGCTGTTCTTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACGGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCATCTTTCACGAGATTGCTTCACTGATGGGGGTGCCCTTTCTGAAGTTATGACCTTGTATGAGAACGTGGATGTAGACAGTCTATCAGATTCAATACAAAGCAAGAATTCGACTGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTTATGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCGTTAACTATTCGTCATTTAAAGGAATATGGTTTTGAAAGAATTTTGTGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAACAATATGGAAATGACCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTGAAAAATAATAATGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCATACTCTCACTATATTTGGTTCCAGACTTCTTAGGCATTGGGTATCTCACCCATTGTGTGACCGAACCTTAATTTCTGCTCGCCTTCATGCTGTATCTGAAATTGCGGAGTCCATGGGATCTTGTAATGCTACGAACAATTTTGGACATGTTGAAGATCCTGATGTAGCAATCGTGCAGCCTGAGTTAGCATACGTTCTTTCATTGGTTTTGACAAATCTTGGCCGAGCACCTGATATACAACGTGGAATTACAAGAATTTTCCATTGCACTGCTTCCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTTATCTGCTGGAAAACAGCTACAACAACTTAACATAGGAGAGGGGAATAATAACAAATTGCGCTCCAATCTATTAAAAAGGTTAGTTTTGACTGCTTCCTCTGACAGTACTATTGACAATTCTGCAAAAATGTTGTCATCTTTAAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCACTGCTTCGGAGGGACAATTCCCAGAGGTCATTAGAGCTCGTAAGGATTTCAAGCTGGCAGTGGAACAATTAGATTCGCTGATTGACTTGTATCGCAAATTGCTTATAATGCAAAATTTGGAATTTATTAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACAGATGTAAAGGTTCCTTCAAACTGGATCAGGGTAAATAGCACGAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGACAGGTTGTCATTAGCAAAAGAGGAGCTCAGTATTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGGCTTTAGTAAACACTATGCTGAGTTCCAAGCTGTTGTTCAAGCACTAGCTGCTTTAGATTGTTTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTTGCCCAGTGTTACTAGATGATCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTACAAGACAATTTTGTCCCAAATGATACAAACTTGCATGCGGATGGAGAATACTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCGGCAAGACTGCACGTCCTGGACAGGATCTGCACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCAGTGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCACGCGACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTTACTCACTATCCAAAGATTGCCAACCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCACGTGTCACATCTGACCCCACATGATGCGAGGAAAAATTCGATCTCGGATCATGATGTCACTTATCTGTACAAGCTCGCACCTGGTGTTTCAGATAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTGCCATCGCATTGCATCAGTCGAGCGCTAGTAATGGCTTCCAAATTAGAAGCACTAGTAAATAGTAGAATACATAGTAGATCGGGAAAGGAGCTATTATTGGATACGCTGGTGATTGGTCAGGAGCAAGAACAGTGTATGGCTCAACCACATGATCGTCCACTTCAAGAGTTTGGTATAGCTTACAAAGATTTCTATCTAAACTTAAAAGCTGCAATACAAGATGATGATTGTGCAAAAAGCTTTCATCTGTTGAAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGTTGA	3228	0.4551	MGKQKQQVISRFFAPKDKPPSPSSPRPNPPTPTPTPKITATATFSPSKRRLTSQITPPRKLQKLLEPSSSSLHQRFLHKFLEPSSPQHPPLPSSSKRLTYTPLEQQVLHLRAKHPDVLLMVEVGYRYRFFAQDAEHAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGEGDGCGGESNYLLCVVEKSVVGEKGNCGVEGGGDVRVGIVAVEISTGDVVYGEFCDSFLRSALEAVLVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVEHLSRDCFTDGGALSEVMTLYENVDVDSLSDSIQSKNSTEHRSQQLVIKEVMNMPDLSVQALALTIRHLKEYGFERILCSGASLRPFSNNMEMTLSANTLQQLEVLKNNNDGSEIGSLLQIMNHTLTIFGSRLLRHWVSHPLCDRTLISARLHAVSEIAESMGSCNATNNFGHVEDPDVAIVQPELAYVLSLVLTNLGRAPDIQRGITRIFHCTASPSEFVAVIQAILSAGKQLQQLNIGEGNNNKLRSNLLKRLVLTASSDSTIDNSAKMLSSLNIDSADQGDLTKLITASEGQFPEVIRARKDFKLAVEQLDSLIDLYRKLLIMQNLEFISISGTTHLIELSTDVKVPSNWIRVNSTKKTIRYHPPEVVTALDRLSLAKEELSIACRAAWNSFLRGFSKHYAEFQAVVQALAALDCLHSLAILSRNKGYVCPVLLDDQEPVQIQICSGRHPVLETTLQDNFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSARLHVLDRICTRMGASDSIQEGRSTFLEELSETSHILQCCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIANLATEFPGSVAAYHVSHLTPHDARKNSISDHDVTYLYKLAPGVSDRSFGFKVAQLAQLPSHCISRALVMASKLEALVNSRIHSRSGKELLLDTLVIGQEQEQCMAQPHDRPLQEFGIAYKDFYLNLKAAIQDDDCAKSFHLLKHARSIAKKLIGS*	1076

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu7g0706	1075	SUPERFAMILY	DNA repair protein MutS, domain II	226	346	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	Pfam	MutS domain I	101	211	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	85	1072	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Pvu7g0706	1075	SMART	DNAend	432	777	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	Gene3D	-	414	742	-	-
Pvu7g0706	1075	MobiDBLite	consensus disorder prediction	18	36	-	-
Pvu7g0706	1075	Gene3D	-	750	1024	IPR027417	-
Pvu7g0706	1075	SUPERFAMILY	DNA repair protein MutS, domain I	95	209	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	PIRSF	Msh6	90	1026	IPR017261	GO:0006298\|GO:0030983
Pvu7g0706	1075	Pfam	MutS domain II	228	324	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	MobiDBLite	consensus disorder prediction	37	59	-	-
Pvu7g0706	1075	Gene3D	DNA repair protein MutS, domain I	92	216	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	SMART	mutATP5	794	991	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	875	891	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	SUPERFAMILY	DNA repair protein MutS, domain III	416	747	IPR036187	-
Pvu7g0706	1075	Pfam	MutS domain V	797	994	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	750	994	IPR027417	-
Pvu7g0706	1075	Pfam	MutS domain III	417	742	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	Gene3D	-	592	718	-	-
Pvu7g0706	1075	Gene3D	MutS, connector domain	224	411	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Pvu7g0706	1075	MobiDBLite	consensus disorder prediction	1	59	-	-
Pvu7g0706	1075	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	85	1072	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g0706	Pvu-Chr7	6241888	6250847	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g0706	K08736		-	gmx:100789883	1736.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu7g0706	7	6241888	6250847	Pvu7g0706	7	6241888	6250847	ECH