Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0493 ATGAAAAACTTCCACACAGCACTTATCTTCTTCATCGGGTTTGTTTCCTCCAGTCTGTTTCAAGATTCAGTTGCATCTGTTGTTTCAACAGGAGACTTCAATAAGGACTTCTTTGTGATATGGTCTCCCACCCATGTGAACACATCTGCTGATGGACAGACAAGGAGCTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACTGTCCTGGCCTATTATCTTACCTCTGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCCGGGCAGCCATATATTCTACAAACAAATATTTTCGCAGATGGAACAGACAACCGAGAGGAGAGAATTTATCTGTGGTTTGATCCAACAAAGGACTTTCATACGTACTCGGTGTTGTGGAATATGCACCAGATTGTGTTAATGGTGGATACGATTCCTGTAAGAGTGTACAGAAACCATGCGGAGAAGGGTGTAGCATTTCCTAGATGGCAGCCAATGAGTCTGAAAGCCACTCTGTGGAATGGTGATAGCTGGGCTACACGAGGTGGGCAAGATAAGATTGATTGGACGAAGGGTCCCTTCATAGCTTCATTCAGAAATTACAAGATTGATGGTTGTGTGTGGAAAGGAAACCCAAGGTTTTGCAGAGCAGCTACCCCTGCGAATTGGTGGAACCAATACAGCTCTAGCACACTCACATCCACACAAAGAAGATGGTTCAAATGGGTCAGGAAATACCACATGATTTATGATTACTGCCAAGACAATCAGAGGTTCCAAAACAATCTTCCAAGGGAATGTTCTCTTCCCAAATACTGA 888 0.4324 MKNFHTALIFFIGFVSSSLFQDSVASVVSTGDFNKDFFVIWSPTHVNTSADGQTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTDNREERIYLWFDPTKDFHTYSVLWNMHQIVLMVDTIPVRVYRNHAEKGVAFPRWQPMSLKATLWNGDSWATRGGQDKIDWTKGPFIASFRNYKIDGCVWKGNPRFCRAATPANWWNQYSSSTLTSTQRRWFKWVRKYHMIYDYCQDNQRFQNNLPRECSLPKY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0493 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu7g0493 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Pvu7g0493 295 Gene3D - 21 294 - -
Pvu7g0493 295 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Pvu7g0493 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 6 293 - -
Pvu7g0493 295 PIRSF EndGlu_transf 2 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu7g0493 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 293 IPR044791 GO:0004553
Pvu7g0493 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 221 IPR000757 GO:0004553|GO:0005975
Pvu7g0493 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu7g0493 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0493 Pvu-Chr7 3893892 3895449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0493 57 295 Glycoside Hydrolase AT2G14620 70.711 1.10e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0493 K08235 - gmx:100783152 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0493 7 3893892 3895449 Pvu7g0493 7 3893892 3895449 ECH