Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2060 ATGGATCTGAGTAGCATCAAAGATGCATTTGATCGTGTAGCCAAGAAGCAAAAATTATCCTCTTCCAAGTCTCAGGAAGTTGTTGACCAGGTGGGGCGTGAAATTGAGCAGGCGTTGGCAACAATTCATTCACCCCATGACCTCTCTTCTCCTGTTGACCAGAAATCCGTTCTCACAGAACTTAAGTTCAAGATTAATGCTATTGGACCACTTCAACAGCTGGAAGGTTCAAATAAGGAATTGAACGCAAGTCTCAGCAAGTATCAAAAACTCCTTGAAAAAGTGTTAAACCCTGACATATCTAAGGCATACAGAAATGTGGACTTTGATACTCGTATTATCAATCAGATCATTGCAAACCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCATTGTAAATGAGGCTGGAGAGCCTGATGCAACTGCCCTTAGATCTCAATTTTTGGAAATGCATCAGATTATTGGAGCTATGAGAGAGAGAAACCTTCAGCCTGCTCTGACATGGGTCTCTGCTAATCGAGAGAAACTTCTTCAGATTGGTTCTAATCTTGAGCTTAAGATTCACAGACTGCAGTTTGTAGAGGTCCTGCAAAATGGGACACGAGCTGATGCCTTAATATACGCCCGAACTTATCTTACTCCTTTTGCTTCCGTCAACAAGGACGAGTTCCCAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGGCTTGAGAGCTCCCCTTATTCTGAGTTGATGTCCCCGATTCATTGGGAGATGACAACTGAAGAGCTCGCACGGCAGTTCTGCACTCTCTTGGGGCAGTCCTATGAGAACCCACTGAGTGTAGCAGTTGCTGCAGGAGTTGAGGGGTTGCCGACCCTGTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAGGAGTGGCTGGAAATGAAACAGTTGCCGGTGCCTGTAGAATTGGGCAAGGAATTTCAGTTTCACTCGATTTTTGTTTGCCCTGTGAGTAGGGATCAAGCAAGTGAAGAGAATCCTCCAATGCTGTTGCCATGCTTACACGTCCTTTGCAAGCAATCAATTATGAAGTTGTCAAAAAACAGCACCCGAACATTCAAGTGTCCATATTGTCCTGCCGAAGCTACAGTTTCACACTGCAGACAACTGCATTTCTGA 1158 0.4447 MDLSSIKDAFDRVAKKQKLSSSKSQEVVDQVGREIEQALATIHSPHDLSSPVDQKSVLTELKFKINAIGPLQQLEGSNKELNASLSKYQKLLEKVLNPDISKAYRNVDFDTRIINQIIANHFYRQGLFDLGDSIVNEAGEPDATALRSQFLEMHQIIGAMRERNLQPALTWVSANREKLLQIGSNLELKIHRLQFVEVLQNGTRADALIYARTYLTPFASVNKDEFPKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELARQFCTLLGQSYENPLSVAVAAGVEGLPTLLKLANVMAAKKQEWLEMKQLPVPVELGKEFQFHSIFVCPVSRDQASEENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVSHCRQLHF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2060 385 Pfam RING-type zinc-finger 328 369 IPR027370 -
Pvu6g2060 385 ProSiteProfiles LIS1 homology (LisH) motif profile. 110 142 IPR006594 GO:0005515
Pvu6g2060 385 SMART ring_2 328 371 IPR001841 -
Pvu6g2060 385 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 1 385 IPR045098 GO:0004842|GO:0043161
Pvu6g2060 385 Coils Coil 71 91 - -
Pvu6g2060 385 PANTHER PROTEIN RMD5 HOMOLOG 1 385 - -
Pvu6g2060 385 ProSiteProfiles Zinc finger RING-type profile. 328 371 IPR001841 -
Pvu6g2060 385 Pfam CTLH/CRA C-terminal to LisH motif domain 149 290 IPR024964 -
Pvu6g2060 385 ProSiteProfiles Gid-type RING finger profile. 328 371 IPR044063 GO:0061630
Pvu6g2060 385 SUPERFAMILY RING/U-box 322 382 - -
Pvu6g2060 385 SMART ctlh 149 206 IPR006595 -
Pvu6g2060 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 384 IPR013083 -
Pvu6g2060 385 SMART toby_final6 202 296 IPR013144 -
Pvu6g2060 385 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 149 206 IPR006595 -
Pvu6g2060 385 CDD dRing_Rmd5p_like 326 374 IPR037683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2060 Pvu-Chr6 30384380 30389570 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2060 K23333 - gmx:100799584 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2060 6 30384380 30389570 Pvu6g2060 6 30384380 30389570 ECH