Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1931 ATGATTCTTCGCAGAATCGCAGCCGCTAGCAGGTCATACTACACGAGCAGGACAAATAAACCGAACCTGTACTCGAAAATCAGCCCCCTCGGAAATCCCAACACCAGTGTGGTACCGGTACTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGTACATGAATGGTGTGTGCATATTCTCTCCAACGGAACATGCGGTGCATTTGGATCTGATTGGCAATGTTCAAGGATTCTCTGCTGCAGAAAGCTATTTTGATGCCTTGAGGAATGTAGACAAAACCCATAAGACCTACGGTGCTCTCTTGAATTGCTATGCTCGCCAGCGTGAAGCTGACAAGGCCCTGTCTCATTTTCTGAAAATGAAGGAGTTGGGGTTTGCTTCGTCTCCTCTAACCTACAATGTCATTATGTGTCTGTACTCAAAGATTGGACAGCACGAGAAGGTTCCTGATGTGCTAAGTGAGATGAAAAAGAACGAGGTCATGCCTGACAATTTTACCTACAGGATCTGTATAAATTCTTATGGTGTGAGGTCTGATTTTGGTGGAGTGGAAAGAGTGTTGAAAGAAATGGAGACTCAACCACACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGTTTAGAAGAGAGGCAGTTTCTGCCCTAAAGAAATCTGAGGAGAAGCTAGGTAACAAAGATGGCCAAGGTCACAATCATCTCATCTCTCTGTATGCCCAACTTGAACTGAAGAATGAGGTCATGAGAATATGGGATCTGGAGAAAAGTGCTTGCAAGAGGTGCATAAACAGGGATTTCACAACCATGTTAGAATCCCTTGTAAAGCTTGGGGCGTTCGATGAAGCTGAGAAAATACTTATGGAATGGGAATCCTCTGGCAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCATTGGGTATGCACAAAAAAGTTTGTATGAGAAAGCCGAGACCATCCTCCTAGAGTTACAAAATAAGGAAAAGCTCACAACCCCAAACTGTTGGTCAATGGTGGCAGGTGGATATCTTCACAAGGGTGAGACGGAGAAAGCATTGAGGTGCTTTAAAACTGCCCTCTCTATGTACGTGGAAAATAAAGGATGGAAGCCGAACGCAAAGGTGGTTGCAGAACTATTAAGTTGGATTGCTGATAACAGCAGTATTGAAGATGCAGAAGATTTCATCAGATTATTAAGAAATGCCATCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATGTGCGAGGTGGTAAAGAAGTGGATGAGCTTCTGGACCGCATGGAGAAAGATGGCATCGTCGAAAACAAAGAAACTAAGAAAATAATCAAAATCAGGAATGCATGA 1461 0.4353 MILRRIAAASRSYYTSRTNKPNLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMYMNGVCIFSPTEHAVHLDLIGNVQGFSAAESYFDALRNVDKTHKTYGALLNCYARQREADKALSHFLKMKELGFASSPLTYNVIMCLYSKIGQHEKVPDVLSEMKKNEVMPDNFTYRICINSYGVRSDFGGVERVLKEMETQPHIVMDWNTYSIVANFYIKAGFRREAVSALKKSEEKLGNKDGQGHNHLISLYAQLELKNEVMRIWDLEKSACKRCINRDFTTMLESLVKLGAFDEAEKILMEWESSGNCYDFGIPSIVIIGYAQKSLYEKAETILLELQNKEKLTTPNCWSMVAGGYLHKGETEKALRCFKTALSMYVENKGWKPNAKVVAELLSWIADNSSIEDAEDFIRLLRNAIPVNRQVYHTLIKTYVRGGKEVDELLDRMEKDGIVENKETKKIIKIRNA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1931 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Pvu6g1931 486 Gene3D Tetratricopeptide repeat domain 52 266 IPR011990 GO:0005515
Pvu6g1931 486 Gene3D Tetratricopeptide repeat domain 287 396 IPR011990 GO:0005515
Pvu6g1931 486 Gene3D Tetratricopeptide repeat domain 397 482 IPR011990 GO:0005515
Pvu6g1931 486 SUPERFAMILY TPR-like 107 411 IPR011990 GO:0005515
Pvu6g1931 486 Pfam PPR repeat 124 153 IPR002885 -
Pvu6g1931 486 Pfam PPR repeat 338 361 IPR002885 -
Pvu6g1931 486 Pfam PPR repeat 301 328 IPR002885 -
Pvu6g1931 486 Pfam PPR repeat family 159 202 IPR002885 -
Pvu6g1931 486 PANTHER OS07G0598500 PROTEIN 8 484 - -
Pvu6g1931 486 PANTHER OS12G0527900 PROTEIN 8 484 - -
Pvu6g1931 486 TIGRFAM PPR: pentatricopeptide repeat domain 124 153 IPR002885 -
Pvu6g1931 486 TIGRFAM PPR: pentatricopeptide repeat domain 159 191 IPR002885 -
Pvu6g1931 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1931 23 449 EF-hand Containing Proteins AT1G02150 30.841 2.12e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1931 - - gmx:100805658 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1931 6 29496423 29499357 Pvu6g1931 6 29496423 29499357 ECH