Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1923 ATGGATGCTCACATTACTGATTTGGATTGGGAGACTTCCAGTGACAGCAGCAGCAGCAGTGAGGATCAAGAGGATATTGATTTTCAATATGGTGGACAAGCTCGAAGCATATTATCGAGTTTAGAGGAAAGCATTGGGAAGATTGATGATTTTCTGTCATTTGAGAGGGCGTTTGTCCATGGGGATGTGGTGTGTGCCTCCTCAGACCCATCCGGACAGATGGGGAGGGTCACAAGTGTTGATGTGTTAGTGGACTTGGAAAGTGTTCAAGGAAAGAAACTAAAAAATGTGAACTCCAAGAAACTTACGAAGATTCGCTCCATTTCAGAAGGCGATTACGTAGTTAAGGGGCCATGGATTGGTCAGGTTCAAAAGGTGGTAGACAGAGTGATTATATTGTTTGACGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATCAGCTTTTACCACTGACTCATAATCTTCTTGAAGATTCACAGTATCCGTACTATCCAGGGCAGAGAGTCAAGGTTAAGACCTCCACAGCTTCTAAACCAGCTAGATGGCTTTGTGGCACCTGGAAAGACAATCATGGTGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTGTATGTTAATTGGCTTACGTCTGTTTTTTTCGGTTCCAATTTAAATGTAAATGCTCCTCTATGCTGGCAAGATTCAAAAAACATGACCTTGTTGTCCTGTTTTTCACATACAAACTGGCAACTTGGTGATTGGTGCATGCTTCCACCACCTGTGGACCAAAAGGAACAGATGATTCAAGATGCATCTCCATGTGATCCTCATAACGAGCATAATAAGGCTAGAGGATATAAGACGAAAAATCTTAACTCTAACATTGGGGAATTATTTATTATTGAGAAGATAAAGACCGAAGTTGATATTGTTTGGCAAAATGGTGAACAGACTTTTGGATTAGATCCGCTTAACTTAATCCCAGTGAATGTAATAAACAGTCATGAATTTTGGCCCCAGCAGTTTGTGCTGGAAAAAAGTGCTTCTGATGATCCTCTCAAACCTAGCAATCAAAGATGGGGTGTTGTTCTTTCCATGGATGCAAAAGAGCATACTGTAAAGGTACAATGGAGAACTGCTCCCACATCCGAGACAGAAAATTTGACTGGAGATGCAATGATGGAAACTGTGAGTGCCTACGAACTACTCGAGCATCCAGATTATTCTTCTTGTTTTGGTGATATTGTGTTCAAGGCGGCTCAAAAGCAGCTTGGTGACCATGCTGACAAAGATAATATGAAGTCTGTGACCGATGTGAATGTAGAGGCTCCTCTGATAAACCGGGACCAAATCAGTTTTCAGAATAAATCTGTAGATAACAGTTACCTCTCCTGCATTGGTAATGTTACTGGTTTCATAGATGGCGATGTGGAGGTCAAATGGGCTACTGGTTTAACAACAAAGGTTGCACCTTATGAAATTTTCCGAATTGATAATAAGCATGAAGGTTCAACTGAAACTCCTGTTCCTTATGAAGCAAATGTTGAGGAGTTCTCTCAAGAGATGATTGAACATAGAAGTCCTCCATCAGACCAGAAGGGAAAGACATTGCTAGATTGTAATGGCGATAGAGATAATTGTGAAAAGCATCCAGGAGAGAGTAGTTCCTCATCCCTTCCTCAAGCTGCCTTCGAACTTTTCTCCAGCATTAAAGCCGGCATACTCAAAACACTTACTGTAGCATCATTTTCTGGAAAATTCTCCCCAATCCCTAGGTTTGAAGAGGGAAATGAATCTAACTGTCTGGATAAGAAAGATTTGGACACTTGTGACTCTGACACTGAATCACATTTGGTGAGCAAGCTGCAGTCTTCTGAAGGTGTAACTCCATATTGTGTAGTTATTGGGACTCATGAGAGGAATGACTTCCCAGTTTCTTTAGACAACAAAAGTTCAGATCAGTTGAAGCAGTTTGATCTAATTGATAATTGTTCAGACCACTTTTTTTATGAGGGGAAAGGATTTTCGTTATCTCAGGTAAAAAAGGATTGGGTGAAGAAGGTACAACAAGAATGGAACATCCTGGAAAAAAATCTCCCTGAAACTATTTATGTCCGTGTCTTTGAAGAAAGAATGGATCTCATGAGAGCAGCTATTGTCGGTGTGTCTGGGACACCATATCATGATGGATTGTTTTTCTTTGACATACATTTTCCTTCAGAGTATCCCAGCCAACCCCCAATGGTGCATTACATTTCTGGTGGACTACGATTAAATCCTAATTTGTATGAGTCGGGTAAAGTCTGTTTGAGTATACTAAATACGTGGACTGGTACAGCTGCCGAAGTTTGGAACCCTGGAACTTCCACAATTCTTCAAGTCCTTCTTTCTCTTCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGATCAACAAATTGGTAGAGCTGAAGGGGAGAAAAACTCAGTTAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATGTTGTATCTATTAAGAAAGCCTCCCAAGCATTTTGAGGCATTGGTGGAGGAGCACTTTAGACAACGTTCCAAACATATACTTCTGGCTTGTTCGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGGTGGAAATACTCAGAATGAAAACCCAAAGGGAACTTCTACTGGATTTAAGATCATGCTTGCTAAGCTCTTCCCCAAGCTTGTGGAGGCATTTTCTGACAAGGGAATTGATTGCAGAGAGTTCGCTGAGATGCAAAAGTAA 2787 0.4119 MDAHITDLDWETSSDSSSSSEDQEDIDFQYGGQARSILSSLEESIGKIDDFLSFERAFVHGDVVCASSDPSGQMGRVTSVDVLVDLESVQGKKLKNVNSKKLTKIRSISEGDYVVKGPWIGQVQKVVDRVIILFDDGTKCEVITLEKDQLLPLTHNLLEDSQYPYYPGQRVKVKTSTASKPARWLCGTWKDNHGEGTVCAVEAGLVYVNWLTSVFFGSNLNVNAPLCWQDSKNMTLLSCFSHTNWQLGDWCMLPPPVDQKEQMIQDASPCDPHNEHNKARGYKTKNLNSNIGELFIIEKIKTEVDIVWQNGEQTFGLDPLNLIPVNVINSHEFWPQQFVLEKSASDDPLKPSNQRWGVVLSMDAKEHTVKVQWRTAPTSETENLTGDAMMETVSAYELLEHPDYSSCFGDIVFKAAQKQLGDHADKDNMKSVTDVNVEAPLINRDQISFQNKSVDNSYLSCIGNVTGFIDGDVEVKWATGLTTKVAPYEIFRIDNKHEGSTETPVPYEANVEEFSQEMIEHRSPPSDQKGKTLLDCNGDRDNCEKHPGESSSSSLPQAAFELFSSIKAGILKTLTVASFSGKFSPIPRFEEGNESNCLDKKDLDTCDSDTESHLVSKLQSSEGVTPYCVVIGTHERNDFPVSLDNKSSDQLKQFDLIDNCSDHFFYEGKGFSLSQVKKDWVKKVQQEWNILEKNLPETIYVRVFEERMDLMRAAIVGVSGTPYHDGLFFFDIHFPSEYPSQPPMVHYISGGLRLNPNLYESGKVCLSILNTWTGTAAEVWNPGTSTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLVTCKSMLYLLRKPPKHFEALVEEHFRQRSKHILLACSAYLEGAPIGCAFGGGNTQNENPKGTSTGFKIMLAKLFPKLVEAFSDKGIDCREFAEMQK* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1923 928 Gene3D Ubiquitin Conjugating Enzyme 643 920 IPR016135 -
Pvu6g1923 928 Pfam Ubiquitin-conjugating enzyme 684 830 IPR000608 -
Pvu6g1923 928 CDD UBCc 681 834 IPR000608 -
Pvu6g1923 928 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 679 839 IPR000608 -
Pvu6g1923 928 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 1 928 - -
Pvu6g1923 928 MobiDBLite consensus disorder prediction 518 554 - -
Pvu6g1923 928 SUPERFAMILY UBC-like 672 848 IPR016135 -
Pvu6g1923 928 MobiDBLite consensus disorder prediction 518 547 - -
Pvu6g1923 928 SMART ubc_7 682 839 - -
Pvu6g1923 928 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g1923 928 Coils Coil 920 928 - -
Pvu6g1923 928 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 928 - -
Pvu6g1923 928 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1923 Pvu-Chr6 29439817 29446572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1923 22 920 Miscellaneous Gene Families AT2G33770 48.408 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1923 K10581 - gmx:100805463 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1923 6 29439817 29446572 Pvu6g1923 6 29439817 29446572 ECH